Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00202 ATGGGTACTGACGTCGGTGAAGTAGCACGCACGCTACCAAATCCTTGCTCGTTCAAGGTGCATCATACAATGTGCATGGAACTCATGAGATTAGTTGATAGAATCTCAAAGATATTACCGGATATAGAGGCAACACGGCCTCGATGCTCATCGGGAATACAGTCTCTGTGCTCTCTAAACACTGCCATTGATAGGGCCAAACTCCTTCTCCAACATTGTTGTGATTGTAGCAAACTATACCTGGCACTGACGGGACATGCGGTCCTCTTAAGATGCTTGAAGGCAAGAAATTCATTAGGAAAAAGCTTGGAGAAAATTCAGAGTATGGTTTCAGTTATGTTGGCGGCAGAGATTTCTCAAATAATTGATGATCTGGGATGTGCAACATTCGTTCTGGACTCGTCCGAAGAAGAGGCTGGGAGGGTTGTGAGAGAACTGCTCCAGAAAAGTCCTTCAGCATCGGATTCAATGGAAGATTATGAGATTAAAGCTCTTCAGATTGCAGCAGCAAGACTTAATATTACATCTTCAAAGGCCATCTTAATAGAGAAAAGATCTATTAAGAAGTTGGTAGATAAACTTGGGCCAAATGAACCCACGAAAAAGATGATCTTGAAGTATCTTTGGTATCTATTGAAAAAGCATGGAAACCATATCATGGGAGGTCAAATTGGAATGGTCCATGCTCAAAGTGATCAACCAATTGCAACCGATAAATCAAGTCACAGTCCTTCTCATAGTCATTATGCTAGTCAATGTAGAACTCAGTCAATTCACACCCATGAGTTGAGCCGAGCCATCTCTCCTAAGGAATACAGGTGCCCAATGTCTTCAGCTTTGATGTATGATCCTGTAGTGATTGCTTCTGGGGAAACATATGAAAGGATGTGGATACAAAAGTGGTTTGATGAAGGTCATGATATATGCCCAAAAACTGGGAAGAAACTAGCTAATATGTCAGTGACACCAGATACAGCAATGAAGGACTTAATATCAAAATGGTGCAGAGAGAATGGAGTCATCATTACTGACCCTAGCCGGCGAGCAGCAAAGTTCAGTTCACGAGAATCTTCCTTTGCTTCCATTGCGAGCTTTAACATTACATTGAATAAATTACACTTGCCAGTGGATCTTAGCATCGTGTCAATTGAATCAACAGATAGTTATGATTCAGATTCCTCGCAGACTTTAACTACTCATCACTTGATGCTCATGAGGACAAATGATAATTCTTATAGTAGTCATGAATCTCTTGCACTCAAAGATGGTGCAGATTCAATGCTTTTTTCTCAATTCCCTGATCTTCAATGGAATTCTCAATGCCAAGTCATCGAAGATCTGAAAGTTCGTTTGAAAAGCAATTGCCAACCTTTTTGTTCTTCATCAGCTAAGGGTTTCATTGAATCACTCATCAAATTTTTGAACAATGCATATGGCCTGCAAGACATAAAAGCTCTGAAAGCGGGAATGCAGCTGTTCTCAGAATTTGTAAACAAGCACAGAAACACCCAAACATATCTAAGTGAGGATTCATTCAGTGTGTTGGGCAATCTTCTTGATTCAGAAGTTAAAGGAGAAGCTCTTGCGGTGATGGAAAAACTATCCGAGTGTGAGCATAGTAGAGCTAAAATTGCAGCATCCAATGCACTTGCTTCCATTTTAAAGATTCTTGACTCCGAGAGCAGAGAGATCCAACGACAATTTATTCGAATAATGCACAACTTGTCCTCCAACAGTGAAGCTTGTTACCACATGTTATCTCTCCAGTGCCTCATCCCAGGATTACTGCCATTTTTGAAAGATGAGACTTCGTTAAGATACTGCATATGCATATTGAAAAACCTTTGTGATACGGAAGAGGGTAGGGTTTCTGTTGCCAAAACAGAAGGATGCATATCTGCTATTGTTGAAATACTTGAGACTGACAGTAACGAGGAACAAGAACATGCACTGGCTGTCCTACATTCTTTATGCTCTCTAAGTTCTGATTATTGTAAGCTGGTCACGGAACAAGGGGAATGGGTTATTTCTTCCCTTTTCTTTATTGCCAATAATGGCAAAGACAAAGGAAAGGCAAGTGCATTGAAGTTGCTCGGACTTTTGACGGATAATGTAAGAGTTGAAAATGAAGAAAGGTCTAAACCAACTCCCAGCACTTCTCAAGAACCTAACAATCGCCCTCGACAAAAGAAATCATCAAAAATATCTGCATCTTTCAAGAAGTTTTTTGTTTCTTGCATTACAGGTAAGAGATGA 2256 0.4038 MGTDVGEVARTLPNPCSFKVHHTMCMELMRLVDRISKILPDIEATRPRCSSGIQSLCSLNTAIDRAKLLLQHCCDCSKLYLALTGHAVLLRCLKARNSLGKSLEKIQSMVSVMLAAEISQIIDDLGCATFVLDSSEEEAGRVVRELLQKSPSASDSMEDYEIKALQIAAARLNITSSKAILIEKRSIKKLVDKLGPNEPTKKMILKYLWYLLKKHGNHIMGGQIGMVHAQSDQPIATDKSSHSPSHSHYASQCRTQSIHTHELSRAISPKEYRCPMSSALMYDPVVIASGETYERMWIQKWFDEGHDICPKTGKKLANMSVTPDTAMKDLISKWCRENGVIITDPSRRAAKFSSRESSFASIASFNITLNKLHLPVDLSIVSIESTDSYDSDSSQTLTTHHLMLMRTNDNSYSSHESLALKDGADSMLFSQFPDLQWNSQCQVIEDLKVRLKSNCQPFCSSSAKGFIESLIKFLNNAYGLQDIKALKAGMQLFSEFVNKHRNTQTYLSEDSFSVLGNLLDSEVKGEALAVMEKLSECEHSRAKIAASNALASILKILDSESREIQRQFIRIMHNLSSNSEACYHMLSLQCLIPGLLPFLKDETSLRYCICILKNLCDTEEGRVSVAKTEGCISAIVEILETDSNEEQEHALAVLHSLCSLSSDYCKLVTEQGEWVISSLFFIANNGKDKGKASALKLLGLLTDNVRVENEERSKPTPSTSQEPNNRPRQKKSSKISASFKKFFVSCITGKR 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00202 751 MobiDBLite consensus disorder prediction 708 736 - -
Accr9g00202 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 343 IPR013083 -
Accr9g00202 751 Pfam U-box domain 269 338 IPR003613 GO:0004842|GO:0016567
Accr9g00202 751 MobiDBLite consensus disorder prediction 716 736 - -
Accr9g00202 751 Gene3D - 452 718 IPR011989 -
Accr9g00202 751 SUPERFAMILY ARM repeat 437 704 IPR016024 -
Accr9g00202 751 SMART Ubox_2 271 334 IPR003613 GO:0004842|GO:0016567
Accr9g00202 751 PANTHER U BOX DOMAIN-CONTAINING 23 709 - -
Accr9g00202 751 SUPERFAMILY RING/U-box 268 344 - -
Accr9g00202 751 ProSiteProfiles U-box domain profile. 267 341 IPR003613 GO:0004842|GO:0016567
Accr9g00202 751 Pfam Armadillo-like 470 601 IPR006911 -
Accr9g00202 751 SMART arm_5 618 659 IPR000225 GO:0005515
Accr9g00202 751 SMART arm_5 578 617 IPR000225 GO:0005515
Accr9g00202 751 SMART arm_5 537 577 IPR000225 GO:0005515
Accr9g00202 751 MobiDBLite consensus disorder prediction 235 254 - -
Accr9g00202 751 CDD RING-Ubox_PUB 269 316 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00202 Accr-Chr9 2167782 2170894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00202 15 726 U-box Gene Family AT4G36550 36.857 8.74e-134 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00202 - - pcin:129322186 1100.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00202 9 2167782 2170894 Accr10g00026 10 354787 357939 CCT
Accr9g00202 9 2167782 2170894 Accr9g00202 9 2167782 2170894 ECH
Accr10g00026 10 354787 357939 Accr9g00202 9 2167782 2170894 ECH