Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00169 ATGGCGGGTTTGTTCTCACTAGGCGGTGGCGGAGGAGGAGGAGGAGGAGGTAGGGGAGGGGGGAGCAACCAAGAAGACGAACCCGGCCACCCCCATAATAACCCACCCACCGGAGTTCCTCATCCAGACGCCGCCTATTTTTGGTACAAGAATAATGAAGACGTGTCTTGTTACAGAGGCTTCGAGCTGTGGAACCAGCAACCTGTGATGCCTCCTCAAGCGAGGCCCCTTCTCCCCCAAGATCTTTACTCCTTAGGGGTGGGGCCGAGCAGCAGGAGCTCCGATGATCAGTCGTCGTCGAGATCGGGCGCCATGATGATGATGCGTTCCGGCGGCGGAAGCAGCGGCGGCGGAGGAATAAGCTGCCAGGACTGTGGGAACCAGGCCAAGAAGGACTGCCCACACATGCGGTGCAGGACTTGCTGTAAGAGCCGTGGCTACGACTGCCAGACCCACGTGAAGAGCACTTGGGTTCCCGCCTCCAAGCGACGGGAACGACAGCAGCAACAGCAGCAACCACTTCAGCTTCGAGGAGGAGCAGCAGACAACAATCCCAAGAGGCTGAGAGATACTACTTGTAATAATAACCCCAGCACTTCCACTACTCATGTGCAAATGGCTACTACACACTCTTCATCAGCAGAAGGGTTAGAGCATGGGAGTTTTCCGGCGGTGGTTAGTTCCTCGGCGGAGTTCCGGTGCGTACGGGTTAGCTCCATGGACGAGGCTGACGAGCAATACGCATACCAAACGGCTGTGAACATCGGAGGCCATGTTTTCAGAGGAATTCTCTATGACCAAGGCCCTGATCCCAATTACATGTCCACTGCTGATACGTCTCCCGGTGGAGCCGTCCAGCCCCTCAATCTCATTGCCGCCACTGGCACTTCTGCTCTTCCAGCCACTGCCGCAGCAAGCGGTGGTGGTGCCATCGCCGCCGGGGCTAATTCCTCCACCGGGCCGCTCCTCGATCCTTCCTTGTATGCGGCGCCACTTAACCCTTTCATGTCTGGCAGTGGTACGCAGTTCTTTCCTCACCCAAGATCTTGA 1050 0.5733 MAGLFSLGGGGGGGGGGRGGGSNQEDEPGHPHNNPPTGVPHPDAAYFWYKNNEDVSCYRGFELWNQQPVMPPQARPLLPQDLYSLGVGPSSRSSDDQSSSRSGAMMMMRSGGGSSGGGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQQQQQPLQLRGGAADNNPKRLRDTTCNNNPSTSTTHVQMATTHSSSAEGLEHGSFPAVVSSSAEFRCVRVSSMDEADEQYAYQTAVNIGGHVFRGILYDQGPDPNYMSTADTSPGGAVQPLNLIAATGTSALPATAAASGGGAIAAGANSSTGPLLDPSLYAAPLNPFMSGSGTQFFPHPRS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00169 349 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 31 333 IPR007818 GO:0003700|GO:0006355
Accr9g00169 349 NCBIfam LRP1 C-terminal domain 222 269 IPR006511 -
Accr9g00169 349 MobiDBLite consensus disorder prediction 80 119 - -
Accr9g00169 349 MobiDBLite consensus disorder prediction 159 218 - -
Accr9g00169 349 MobiDBLite consensus disorder prediction 187 216 - -
Accr9g00169 349 NCBIfam putative zinc finger domain, LRP1 type 121 163 IPR006510 -
Accr9g00169 349 MobiDBLite consensus disorder prediction 159 178 - -
Accr9g00169 349 MobiDBLite consensus disorder prediction 1 41 - -
Accr9g00169 349 MobiDBLite consensus disorder prediction 86 105 - -
Accr9g00169 349 Pfam Domain of unknown function (DUF702) 119 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00169 Accr-Chr9 1870016 1871675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00169 1 338 C2H2 Transcription Factor Family AT5G66350 47.368 5.59e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Accr9g00169 DUF702 1.1e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00169 - - qsa:O6P43_024815 317.39