Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00148 ATGGGAAGAGGAAAGATTGAGATCAAGCTGATACAGAACCCCACCAACAGGCAAGTCACCTACTCCAAGCGACGTAGTGGCATCTTCAAGAAGGCTCATGAGCTCAGTGTTCTCTGTGATGCTAAGGTCTCTCTCATCATGTTCTCTAAAAACAAGAAGATGCACGAATATGTCACCCCTGGCCTTACAACCAAGAAGATGATTGATCAATACCAGAAGGCGTTGGGGAATGTTGATTTGTGGTCTGTCCACTACGAGAGAATGCTGGAAAAGCTAAGGAAACTGAAGGAAACTAACAATAAGCTCAGAGGAGAGATCAGGTTGGGAGCAGATTTGGACAATCTGAACTTTCAGCAGCTACAAAGTCTTGAGGAGGACATAATTTCTTCCTCTGCAATGATACGAGAAAGGAAGCTTCATGTGATCAAAACTCGGACCGAGACCTGCAAGAAAAAGGTAAAAAACTTGGAGCAGGTGAACGATAGTTTAGTGCTTGGAATTAAGGACCAGTATATGGTGCATCCACATTACATGATGATGTAG 543 0.4365 MGRGKIEIKLIQNPTNRQVTYSKRRSGIFKKAHELSVLCDAKVSLIMFSKNKKMHEYVTPGLTTKKMIDQYQKALGNVDLWSVHYERMLEKLRKLKETNNKLRGEIRLGADLDNLNFQQLQSLEEDIISSSAMIRERKLHVIKTRTETCKKKVKNLEQVNDSLVLGIKDQYMVHPHYMMM 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00148 180 Coils Coil 85 105 - -
Accr9g00148 180 Pfam K-box region 84 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr9g00148 180 ProSiteProfiles K-box domain profile. 78 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr9g00148 180 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr9g00148 180 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 146 - -
Accr9g00148 180 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr9g00148 180 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr9g00148 180 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr9g00148 180 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Accr9g00148 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Accr9g00148 180 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Accr9g00148 180 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Accr9g00148 180 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Accr9g00148 180 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00148 Accr-Chr9 1723959 1725572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00148 1 180 MADS-box Gene Family AT3G54340 50.000 3.91e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Accr9g00148 K-box 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00148 K09264 - gmx:100784496 270.396