Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00145 ATGCTTTACCAAACTCACCACCCTCTTCTCTTTCACTCCCCTCCTTCCTTATCTCACCTCCCACCCTCCTCTCATCTCTCTCTTCCTCAGGCCGAAACCCAAATGGAGTGCCTCCAATCGGCGTTGAAGACCGGTTTTACCAGAGACGCAGCCGTGAAACTTAACCCCCTGTCTTCTGTTGACGACTCCTCCGCCTTCAATCTCCCAAATGCTGCCACTTTCGACGACTTCTCTGTCGACGAACTCCTCGACTTTTCACACTTAGAAGAGCCATTCGAAGATGAAAACCACCAAAAGCCCGACCCTGCTTCTGTTTCCCCTCCACCTGTGGGCTCAAGTCATGAAATTTGCCACTTTACCTTCCCCTGTTCTGTCAAAGACGATGTTGCCTCCTTGCCCTCCAGCGAACTCAGCGTTCCGGCTGATGATTTGGCGAACTTAGAGTGGTTGTCTCATTTTGTCGAGGATTCCTTCGCCGTACATTCCTCTGCTTATCCCGCCGGAACTCTCATGGGAAAGCCGGAGCAAAGGCCTGAACCGGACGGCCGTGTTTGGACTCTTCCCTGTTTTAAAACTCCGGTTCCGGCTAAGGCCAGAAGCAAGAGAACGAGAACCGGAGTTCGGGTGTGGCCTTTCAGGTCTCCATCCTTAACCGAGTCATCTTCAAGCTCCTCGTCGTCTTCCTCATCCTCAACCCCCACGAGCCCCCTGTTCATTTCCGCCAGCACAGGGCCCGAACAAGTTTGTTCTGAGGCCAAGCCACCGGCGAAGAGACCCAAGAAACCGGAGGGTGGCCCGGGGATCGGTTTAACAACGCAGACGCCACGCCGGTGCACCCACTGCGGGGTCCACAAGACGCCGCAGTGGCGAACCGGTCCGATGGGAGCAAAAACTCTGTGCAACGCATGCGGGGTCCGGTACAAGTCGGGTCGTCTTTTGCCGGAATACAGGCCAGCGTGTAGCCCGACGTTCTCGAGCGAACTGCACTCGAACCACCACCGTAAAGTTCTGGAGATGCGGCTGAAGAAGGAGGAGGGAGTGGGAGGAGGCGAGTCCAGTATGGGCGGGGCCCCGACTCCGGCAGTTCCGAGTTTTGGATAA 1101 0.5604 MLYQTHHPLLFHSPPSLSHLPPSSHLSLPQAETQMECLQSALKTGFTRDAAVKLNPLSSVDDSSAFNLPNAATFDDFSVDELLDFSHLEEPFEDENHQKPDPASVSPPPVGSSHEICHFTFPCSVKDDVASLPSSELSVPADDLANLEWLSHFVEDSFAVHSSAYPAGTLMGKPEQRPEPDGRVWTLPCFKTPVPAKARSKRTRTGVRVWPFRSPSLTESSSSSSSSSSSSTPTSPLFISASTGPEQVCSEAKPPAKRPKKPEGGPGIGLTTQTPRRCTHCGVHKTPQWRTGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRLKKEEGVGGGESSMGGAPTPAVPSFG 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00145 366 CDD ZnF_GATA 277 325 IPR000679 GO:0006355|GO:0043565
Accr9g00145 366 PANTHER GATA TRANSCRIPTION FACTOR 73 344 - -
Accr9g00145 366 Pfam GATA zinc finger 278 312 IPR000679 GO:0006355|GO:0043565
Accr9g00145 366 MobiDBLite consensus disorder prediction 346 366 - -
Accr9g00145 366 ProSiteProfiles GATA-type zinc finger domain profile. 272 308 IPR000679 GO:0006355|GO:0043565
Accr9g00145 366 Gene3D - 270 344 IPR013088 GO:0006355|GO:0008270
Accr9g00145 366 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 272 333 - -
Accr9g00145 366 SMART GATA_3 272 326 IPR000679 GO:0006355|GO:0043565
Accr9g00145 366 ProSitePatterns GATA-type zinc finger domain. 278 303 IPR000679 GO:0006355|GO:0043565
Accr9g00145 366 FunFam GATA transcription factor 270 352 - -
Accr9g00145 366 MobiDBLite consensus disorder prediction 213 275 - -
Accr9g00145 366 MobiDBLite consensus disorder prediction 214 247 - -
Accr9g00145 366 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00145 Accr-Chr9 1694263 1695574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00145 39 365 C2C2-Gata Transcription Factor Family AT5G66320 50.292 7.13e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Accr9g00145 GATA 2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00145 - - pmum:103340171 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00145 9 1694263 1695574 Accr9g00145 9 1694263 1695574 ECH