Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00138 ATGGATAAGCCTCACTACCTCCTGCAGGCTTCCCCCATGGACAAGCCCTCTCTCCCCGATGCTCAAAGACCCACCTTTGACCGTTCTCACCAGACCCTCCACTTGATGACCGTCGATCCCTCCCGGACTGCCGGGGATGCCCAGGATTCCCAGCTCCTCTCCGCTCCCGCCCGCGATGCTGATGTGGCCGTCACGCACCCTGCCTGCTTGCCCAACTTGGAACTCAAGGCTGATGTGAAGCTCGCGGACGGCACCTCCGGGAAAAGAAAGCGCGGTCGCCCGGCCAGGGGTACTGCCAGGGAACCGCCATTGAAGAAGAATAGGGACGAGGAGGATGTCTGTTTCATTTGTTTCGATGGTGGGAGCCTTGTTCTCTGTGATCGCCGGGGCTGTCCTAAAGCATACCATCCCGCATGTATTAAGCGAGACGAGGCATTCTTCCGTTCCAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCATTTGTCAGAAGGCATCCCATTATATGTGCTATACGTGTACATATTCTTTGTGCAAGGGTTGTATAAAAGGTGCCGATTATCTCTGTGTCAGAGGGAATAAAGGTCTGTGCGGGATATGCATGAGGACTATAATGCTCATTGAGAACAGTGCCCATGGAAACAAGGAAATGTGTGAAGTAGATTTCGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTCTACTGGTTGTACTTGAAAGAGAAGCTATCTTTAACGTTAGATGAGATCCTTCGAGCCAAAAGCCCATGGAAAGGAGCTGCTACCAATGGTTTGAAGTTAGAAATGCCTCATGAAAGTCATATCCATAAAGATGACAAGGGTTCCGGATCTGAGAACTCCTGTATAGACATAGAATCAAATAATTTAGAAAATAGCCATTCAAATAGACAGCCAAGGCTTCTTAATAAGGAGGAATGCCCAAATGTGAACACTTCAGCTGGTGACAAAGATTCATCTATGGCTGAACGCACAAAATGGGCATCAAAGGAGCTTTTAGAGTTTGTTTCACATATGAAAAATGGCGATACATCTCTCCTATCTCAACATGATGTAGAGGTCCTTTTGCTGGAGCATATCAAGAAAAACAATCTTTGTGATCCTCAACAGAATGGCCAAGTTGTTTGTGATTCAAGGCTAGTCAATTTGTTCAGAAAGGAGCGCGTAGGTCACTCAGAAATGTTGAAGCTTCTTGAATCTCATTTTCTTATAAAAGATCATGCCTCTACCAATATTTTTAGGTCAGGGCCTATTGATGATGTTGCTAGTCAGATTCAGGTTAATGGCAGTGGTAATAATCAGCCAATTGTGGCTAATGATAAGAGAAATAAAACATATAAAAGGGCTGAAATGCTGCTTGATGATCCGGACGCACGTGCCGTAATAAATGCTCACAACATTAACTTGATTTACTTGCGGCGCAATCAGATGGAGAATCTAGTTGAAGATGCTGAGAACTTTAAAGACAAAGTTGTTGGTTCAATTGTGCGGATAAGAATCTCCAGCAGTGATCAAAAGCAAGAGATGTATAGGCTTGTACATGTTATAGGTACCAGCAATATTGCTGAATCTTACAATATTGGCTCAAGAACAACAGGCATTGTGCTTGAAATTTCTAATTTAAACAAGAAAGAGGTCATAAAAATAAGTGAGATTTCCGATGAGGCTTTCTCTGAGGAGGAATGCAAACGGTTGCGCCAGAGCATAAAATATGGGTTTTCAAAAATATTAACTGTGGGAGAGATTATGGAAAAGGCATTGACACTACAAGCTGTGAGAGTTAATGATTTGCTGGAAGGCGAGATGCTTCAGCTTAACCATCTTCGTGATAGAGCAAGTGAAAAGGGACATAGAAAAGAGCAGAAAGTGTGTGGGGAGAAGTTGCAATTTTTGAACTCACCTGAGGAAAGACAGCGAAGGCTGGATGAAATTCCAAAAGTGTACCCTGATCCAAATTTGGATTCAATGTTTGACTCTGATGAAGATGCTGAAAAGTCAGGTGAAAGGAAGCAAGATGACAACGTGCAGTCTAAAAATTCTGGATTTAATAGAAGGGAGAGAGAGCCTAGTTCTCCAAGAAGTCAGAATGGTGTACTGAATGATATTGGATGCAGAGCACTAGATTTTTTGGTCACTGCCCATGAACAGATTGGGAATACATGCACAATGAAGAACCAGACCAGCCCAAATGATACAGCAAATGGTGATAGCAAGAATTTAGTAGTGGCAATGTCAGGGACGTCTGGTGTTGCATCAGGTCCTCCATCTTTGCCTTTCTCTACAGGGAAGGAGCAGCCATTTAATGGTCTTGCAACTGATGAGCTATGGAACTATCGGGATCCATCTGGGAAGATTCAAGGACCATTTTCTTTGCTAATGTTGTATAAGTGGAACGCAAGTGGGCATTTCCCTTCTGATATCAGAATATGGAAGAACACTGAAAAACAAGATGACTCTATATTGTTAACGGATGTATTAAGTGGGAAGTGTTTCAAAAATGCGTCTTTGCCATGCAATAGCCAGCTACTATCTTTAGGGATCATGGCTGCACAGAGTGATGAAGATGATATTGATTTGCATAGTGGCACTCCTGTAACCAGTTCCTCAACTTGTGTAGATTCTACATCTACTATTGTTCCTGCTAAAAAATCATCACCGAAAAACTCACAAATTGGTTTTCTGGAGTTGCCTGGTGATAACTCTAAGCCAACTCATTCTGGACATACAGGTCAGTCTGCTGAAAATAAACATTCCTGGAGTACTGCTTCCAGCTTAGTTGGTGGTGGGACGCCACTTCCAGAAGTGACTGTTGAGTGGAGAAGATGCTCACCAGCTCCGCCTAATCCTTCTGTTGAGGAATGGGATTCCAATCTTGTCTCTGCATCTTCATTGAAGCCAGCTGAAGCTGTTGGTGATTGTTCTGCCACTCCTCCTTCAATATGTGATCAACTAACACATTCTTCCCCATCCAATCCAGCCTGTAATACAACTCCATGGGCAATTATCGATGAGCAAAATGATTTTGGCTCATTTGATGATGAGACAGTTTCAGATCTGTTGGCAGAAATGGAGGCAATGGAGTCTCTTGGTGGGTTGGAATCCCCCTCATCGATCATGAAATGTGGTGAGGAATTAACTGAGGGTTCTAATTGTCTTAGCCCTAGAGAGGGACTTAGCCCAATGCCTGATGCAGGTAAAGGCGATGCCCTGAGCTCCACAGGAGATTTACAATTTCCCTCTCAATCCACAGCACCAGAGGTGCCATTATGCCAACCAGATGTACACTACCACCAAAGAATCTCTGGAGGGCATTCTGACAGAAATCCTGAAGTTGTTGGCTCAAAGAATAGTGTTTCAGGTAACCAATGGAAGTCAGGTTCAGGAATTCCATCCACAGCAACCTGGGCCATGCCTACAGAGGCTACTTGGAGACTCGGGCAAGATAGCAGAAGTGGTTGGGAGGCGTCTCAGGTAAATATGAACTTGGGCTGGGGTGGAATGGATAATAAAGGAAATGCAAACACAAGTTGGGGAGTAGGACAGGGGACAGTGCAGGAGAACAGGAACACAAACTCATCCACTTCCGTAGGAAATTCAGGCACTTGGGGGAACCAAGCTAGATATGGCAGCGATCGATTCTCTCCCCGGGGTAGGGATATGAATTCTGGTAGAGGTAGAAATATGTGGAACAGGCAACCTTTTGGTGGCGGAAATGGATGCTCCCAAAGGCCCCCGCCCAGAGGGCACCGAATCTGTAAATTTTACGAAAGTGGGTACTGTAAGAAGGGAGCATCATGTGATTACTTGCACCCATGA 3837 0.4459 MDKPHYLLQASPMDKPSLPDAQRPTFDRSHQTLHLMTVDPSRTAGDAQDSQLLSAPARDADVAVTHPACLPNLELKADVKLADGTSGKRKRGRPARGTAREPPLKKNRDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSICQKASHYMCYTCTYSLCKGCIKGADYLCVRGNKGLCGICMRTIMLIENSAHGNKEMCEVDFDDKSSWEYLFKVYWLYLKEKLSLTLDEILRAKSPWKGAATNGLKLEMPHESHIHKDDKGSGSENSCIDIESNNLENSHSNRQPRLLNKEECPNVNTSAGDKDSSMAERTKWASKELLEFVSHMKNGDTSLLSQHDVEVLLLEHIKKNNLCDPQQNGQVVCDSRLVNLFRKERVGHSEMLKLLESHFLIKDHASTNIFRSGPIDDVASQIQVNGSGNNQPIVANDKRNKTYKRAEMLLDDPDARAVINAHNINLIYLRRNQMENLVEDAENFKDKVVGSIVRIRISSSDQKQEMYRLVHVIGTSNIAESYNIGSRTTGIVLEISNLNKKEVIKISEISDEAFSEEECKRLRQSIKYGFSKILTVGEIMEKALTLQAVRVNDLLEGEMLQLNHLRDRASEKGHRKEQKVCGEKLQFLNSPEERQRRLDEIPKVYPDPNLDSMFDSDEDAEKSGERKQDDNVQSKNSGFNRREREPSSPRSQNGVLNDIGCRALDFLVTAHEQIGNTCTMKNQTSPNDTANGDSKNLVVAMSGTSGVASGPPSLPFSTGKEQPFNGLATDELWNYRDPSGKIQGPFSLLMLYKWNASGHFPSDIRIWKNTEKQDDSILLTDVLSGKCFKNASLPCNSQLLSLGIMAAQSDEDDIDLHSGTPVTSSSTCVDSTSTIVPAKKSSPKNSQIGFLELPGDNSKPTHSGHTGQSAENKHSWSTASSLVGGGTPLPEVTVEWRRCSPAPPNPSVEEWDSNLVSASSLKPAEAVGDCSATPPSICDQLTHSSPSNPACNTTPWAIIDEQNDFGSFDDETVSDLLAEMEAMESLGGLESPSSIMKCGEELTEGSNCLSPREGLSPMPDAGKGDALSSTGDLQFPSQSTAPEVPLCQPDVHYHQRISGGHSDRNPEVVGSKNSVSGNQWKSGSGIPSTATWAMPTEATWRLGQDSRSGWEASQVNMNLGWGGMDNKGNANTSWGVGQGTVQENRNTNSSTSVGNSGTWGNQARYGSDRFSPRGRDMNSGRGRNMWNRQPFGGGNGCSQRPPPRGHRICKFYESGYCKKGASCDYLHP 1278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00138 1278 MobiDBLite consensus disorder prediction 1192 1253 - -
Accr9g00138 1278 CDD SWIB-MDM2_like 334 409 - -
Accr9g00138 1278 ProSiteProfiles Zinc finger PHD-type profile. 111 177 IPR019787 -
Accr9g00138 1278 MobiDBLite consensus disorder prediction 287 304 - -
Accr9g00138 1278 SUPERFAMILY FYVE/PHD zinc finger 108 158 IPR011011 -
Accr9g00138 1278 MobiDBLite consensus disorder prediction 1110 1140 - -
Accr9g00138 1278 MobiDBLite consensus disorder prediction 271 328 - -
Accr9g00138 1278 ProSitePatterns Zinc finger PHD-type signature. 114 174 IPR019786 -
Accr9g00138 1278 FunFam Zinc finger CCCH domain-containing protein 19 103 203 - -
Accr9g00138 1278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 201 IPR013083 -
Accr9g00138 1278 MobiDBLite consensus disorder prediction 1192 1215 - -
Accr9g00138 1278 ProSiteProfiles Plus3 domain profile. 468 601 IPR004343 GO:0003677
Accr9g00138 1278 MobiDBLite consensus disorder prediction 868 902 - -
Accr9g00138 1278 Gene3D SWIB/MDM2 domain 320 418 IPR036885 -
Accr9g00138 1278 MobiDBLite consensus disorder prediction 1117 1140 - -
Accr9g00138 1278 ProSiteProfiles Zinc finger C3H1-type profile. 1253 1278 IPR000571 GO:0046872
Accr9g00138 1278 Pfam SWIB/MDM2 domain 336 409 IPR003121 -
Accr9g00138 1278 SUPERFAMILY CCCH zinc finger 1253 1277 IPR036855 GO:0046872
Accr9g00138 1278 SUPERFAMILY GYF domain 779 833 IPR035445 -
Accr9g00138 1278 SMART gyf_5 781 836 IPR003169 GO:0005515
Accr9g00138 1278 MobiDBLite consensus disorder prediction 865 937 - -
Accr9g00138 1278 Gene3D - 467 598 IPR036128 GO:0003677
Accr9g00138 1278 SUPERFAMILY SWIB/MDM2 domain 331 410 IPR036885 -
Accr9g00138 1278 MobiDBLite consensus disorder prediction 271 286 - -
Accr9g00138 1278 MobiDBLite consensus disorder prediction 665 698 - -
Accr9g00138 1278 SUPERFAMILY Plus3-like 469 597 IPR036128 GO:0003677
Accr9g00138 1278 SMART rtf1 468 578 IPR004343 GO:0003677
Accr9g00138 1278 MobiDBLite consensus disorder prediction 84 104 - -
Accr9g00138 1278 ProSiteProfiles SWIB/MDM2 domain profile. 328 411 IPR003121 -
Accr9g00138 1278 CDD PHD5_NSD 113 158 - -
Accr9g00138 1278 ProSiteProfiles GYF domain profile. 780 834 IPR003169 GO:0005515
Accr9g00138 1278 Gene3D - 782 837 IPR035445 -
Accr9g00138 1278 MobiDBLite consensus disorder prediction 641 706 - -
Accr9g00138 1278 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 871 1278 - -
Accr9g00138 1278 MobiDBLite consensus disorder prediction 909 934 - -
Accr9g00138 1278 MobiDBLite consensus disorder prediction 1070 1089 - -
Accr9g00138 1278 Pfam Plus-3 domain 473 576 IPR004343 GO:0003677
Accr9g00138 1278 MobiDBLite consensus disorder prediction 1 25 - -
Accr9g00138 1278 SMART PHD_3 113 159 IPR001965 -
Accr9g00138 1278 Pfam GYF domain 783 823 IPR003169 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00138 Accr-Chr9 1566063 1572119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00138 111 191 PHD Transcription Factor Family AT4G14920 34.568 4.71e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Accr9g00138 Plus-3 2.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00138 - - pcin:129322136 2173.67