Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00130 ATGTCGTCCGCTGGAGAAGGTGATCGCACTGCCGTTGATCAGTCCCCAGAGAAGCCTAAGCCAGTGACCAAGGAGAAGAAGCCCAAGGTTCCAAAGGAGAAGAAGCCCAAGCAGGCGAAAACAGTTTCTCATCCTCCATATTTTCAGATGATTAAGGAAGCTTTATTGGCTCTGAACGAGAAGGGTGGCTCTAGCCCCTACGCCATAGCCAAATACATGGAGGAGAAGCACAAGGCGGTTCTTCCTGCGAATTTCAGGAAGATCTTGGCCCTTCAGTTGAAGAACCAGGCTGCGAGAGGGAAGCTCATCAAGATCAAGGCCTCCTACAAGCTATCCTCTGAGGCCGGCAAGGAGGACAGGGACGCCACTGGCATGGTCACGAGGTCCACCACACAGAAGGCCCAGCGATCTAAGCGAAGCGCGGCTAAGAAATCAGAGACAGGCAAGAAAGCTAGGAAGGCAGTGAGGAAAGTAGTTGGGGTGAAGAAGACGAAGAAATCGGCCACACCTGCGAAGCCGAAGCAGCCCAAGTCTCTGAGAACTCCCTCTAAGAGAGCCAGAAGAGTTACTGCATCAGCTTCATGA 585 0.5265 MSSAGEGDRTAVDQSPEKPKPVTKEKKPKVPKEKKPKQAKTVSHPPYFQMIKEALLALNEKGGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNQAARGKLIKIKASYKLSSEAGKEDRDATGMVTRSTTQKAQRSKRSAAKKSETGKKARKAVRKVVGVKKTKKSATPAKPKQPKSLRTPSKRARRVTASAS 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00130 194 Pfam linker histone H1 and H5 family 44 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Accr9g00130 194 SMART h15plus2 41 108 IPR005818 GO:0000786|GO:0003677|GO:0006334
Accr9g00130 194 Gene3D - 39 123 IPR036388 -
Accr9g00130 194 MobiDBLite consensus disorder prediction 1 45 - -
Accr9g00130 194 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 43 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Accr9g00130 194 PANTHER HISTONE H1 16 178 - -
Accr9g00130 194 PRINTS Histone H5 signature 133 147 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Accr9g00130 194 PRINTS Histone H5 signature 30 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Accr9g00130 194 PRINTS Histone H5 signature 57 74 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Accr9g00130 194 PRINTS Histone H5 signature 165 182 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Accr9g00130 194 MobiDBLite consensus disorder prediction 110 194 - -
Accr9g00130 194 SUPERFAMILY "Winged helix" DNA-binding domain 40 119 IPR036390 -
Accr9g00130 194 CDD H15 41 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Accr9g00130 194 MobiDBLite consensus disorder prediction 11 29 - -
Accr9g00130 194 MobiDBLite consensus disorder prediction 149 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00130 Accr-Chr9 1469874 1470567 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00130 30 116 Single Myb Histone (SMH) Gene Family AT1G72740 37.931 2.98e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00130 K11275 - gmx:100500169 193.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00130 9 1469874 1470567 Accr9g00130 9 1469874 1470567 ECH