Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00128 ATGCGAACTAGAAACGCTGGTTCTTCCAAGACACCGCCGGCTAAGAAGACACCGCCGACGAGGAAATCGACATCTAAAAGCCCGGCGAACGCACAATCCTCCCAGACCAAGCGCACCTCTACGATCAAAACTAGGCAGGCAAAGAAGAACGAGGCCTCGCCCCTACAAAATACAAGCTTCAATGAGGAACCGGAGCAATCATCCGAGGAGGCAAAGGCAGCAGCTGATGCCTCTCCAGTGACGCCAGAGACAAAAGTTGTTACAGCTGCAAAGTCAACACCAAAGAGGACGCCTAAGAGAGCTGTGGGAAGACCGAGGAATTCAACTAAAGCTGTTACTGCCCGGGGACAAGAAGAACAAGTGGAGACAATAGCTGATGAAACACCGAAAGCGGATAATATTGAAGAAGCTAAGAAATTGGAGGAGCCTCAAAATGTTGAGGTAGTCAAAGCAGATAAAATTGAGAGTAAAGAAGCGGGGGAACAAAGGGTTGAGTTTGTTAGACAATCTGCAGAGAATGAACTACATCCCAAGGAAAGGGATGAGCGTAATGCTGATAGTGCCAGTGAATTAGCAGAAAAGAAAAGAGACATAGTTGAAGCTGCCTCCCAAGGTGTCCCTATTTTGTTGAATCAAGAAGAACCTTGCATGGCGGAGCTCTCTAAATCTTTGGAGAATGAAGAACCCACTGGTGCAAAAGAAGGAGAGCAAACAAATGAAGAGGAATGGGAAAAAGAATCAGAAAAATCAATGAAAGAACAGACAACTAATATTGGACATAAAGAGCAATTTAATGCTGATCCTGTCAGTATGGAAATGAAAGACCAAAGAGAGCAAGTGAAGAAGGTGGATGGAGAAAAAGAATCAGATAAATCAATGGAAAAGGAGGGAGAAAAAGCATTAGAACAATCCATGCAAGAAGAGACAAGTAATATTATACATAACCAGGAATCTAATGCTGATTCTGTTGAGAAGGAAACGACAAACCAACTTCTGCAAGATGATGTTAAACCTGAAAAGGAGAATCCAAGTGGTGATCAAGCCGCTGAAGGCTGTGGTGAAATGTTGGATAGTGAAAAACAAGGGGGGGAGGAGTTTGTTGAGGCTGATCCAGAGGAGCCTCTTGAAGAAGCTGAGACATTTGATGAGGAACACAAGGAATTGTCAACTATGGCAAAGGAGCGCAAGATTAAGAAAGAGAATGAAATATTTGTGGGTGGGCTTGATCGTGATGCTACAGAGGAGGATCTTAAAAAGGTTTTTGAGAAGATTGGGGAGATAGTTGACGTTAGGTTGCATAAAAATTCTTCAACAAACAAAAACAAGGGCTATGCATTCGTAAAATTTTCTTGTAAGGAACATGCAAAGAAAGCTTTGTCAGAAATGAAAAACCCTGTTATACGTGGTAAGCGATGTGGCACCGCACCCAGTGAGGATAATGATACATTATTCTTAGGAAATATATGCAATACATGGACAAAAGAAGCTATCAAACAGAAGTTGAAGGATTATGGTGTTGAGGATGTTGAAAACATTACACTTGTCCCAGATGTTCGCCATGAAGGATTAAGCCGGGGTTTTGCGTTTCTTGAGTTCTCCTGTCACCACAATGCCATGCTTGCCTATAAGAGGCTTCAAAAGCCTGATGTAATCTTTGGACATGCTGAGCGAACAGTCAAAGTAGCCTTTGCTGAACCTGTACGAGAGCTGGATCCAGAGATTATGGCACAGGTGAAGTCTGTTTTTGTTGATGGTCTCCCTCCACATTGGGATGAAGGCTGCATTAGGGAGCACTTCAAAGGTTATGGTGAAATTGTACGAATTGTACTTGCCCGGAATATGACTACTGCTAATAGGAAAGATTTTGGATTTGTTGATTTCTCTACACATGAAGCCGCTCTAGCTTGTGTTGATGGTGTAAATAGTTCAGACTTTGTTGATGGAACACAAAAGACTAAGGTGAGAGCTAGACTTTCAAATCCTTTGCCTAAAACACAGGCTGTTAAGGGAGGCATGTGTGGTGGGTTCCGGATTGGTCATGCTCGTGGTGGAGCTTTTCCAAGATCTGCTGTAATAGGAAGGGGTTTTACTCGTGGAGGACATGCTGCCAACTGGGGAAATTTTAATAGGGATCGGAATTTTAATCTTGGAGGACATGGTCAAATTGGAAGAATGGGTTTCAGGAATGATTTTAATCTTAATAATGCTTATCCAGATTTTCATCAGAGGCAATTCGGGGAAAGGATGATTCCTTTGAGGGGTGGACATTATGCAGATACACAAGGTGCTGCAGTTGCTGGACCATCTAGGCCTTATCTTGATAGAGCATGGTATGGTACCCCTGAGAGAGGCCCTGGTGAACGGATTCCCCCAAGGATGCCATGGTATGGTACCGCTGAGAGAGGCCCTGGTGAACCTATTCCCCCGAGGATGCCATTCTCCCCTGAAGGACAATTTGATAGGCCTTTTATGGGAAGGCATATTGATGATCCATATCTTTATGAAGACAGTGTGCATGGGATGAAACGACCATTTTATATGACTGACCCGGATCCTAATTACATGGGTCCTGCTAGAGTTCGTCCTCGACTGGATTATACAGATCCTGCTGTATTTCCTGGCAGTCGTTACAATGATTCTATTGCAGCTGGCAGGGAACAGTACTCACATGATTATCATGGTGCTGATTATGGTGGAGGTCCATATTCATCTTTTTATGGGGGTGACAACTCATATGGGCGAAGATACTACTACTAG 2757 0.436 MRTRNAGSSKTPPAKKTPPTRKSTSKSPANAQSSQTKRTSTIKTRQAKKNEASPLQNTSFNEEPEQSSEEAKAAADASPVTPETKVVTAAKSTPKRTPKRAVGRPRNSTKAVTARGQEEQVETIADETPKADNIEEAKKLEEPQNVEVVKADKIESKEAGEQRVEFVRQSAENELHPKERDERNADSASELAEKKRDIVEAASQGVPILLNQEEPCMAELSKSLENEEPTGAKEGEQTNEEEWEKESEKSMKEQTTNIGHKEQFNADPVSMEMKDQREQVKKVDGEKESDKSMEKEGEKALEQSMQEETSNIIHNQESNADSVEKETTNQLLQDDVKPEKENPSGDQAAEGCGEMLDSEKQGGEEFVEADPEEPLEEAETFDEEHKELSTMAKERKIKKENEIFVGGLDRDATEEDLKKVFEKIGEIVDVRLHKNSSTNKNKGYAFVKFSCKEHAKKALSEMKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGVEDVENITLVPDVRHEGLSRGFAFLEFSCHHNAMLAYKRLQKPDVIFGHAERTVKVAFAEPVRELDPEIMAQVKSVFVDGLPPHWDEGCIREHFKGYGEIVRIVLARNMTTANRKDFGFVDFSTHEAALACVDGVNSSDFVDGTQKTKVRARLSNPLPKTQAVKGGMCGGFRIGHARGGAFPRSAVIGRGFTRGGHAANWGNFNRDRNFNLGGHGQIGRMGFRNDFNLNNAYPDFHQRQFGERMIPLRGGHYADTQGAAVAGPSRPYLDRAWYGTPERGPGERIPPRMPWYGTAERGPGEPIPPRMPFSPEGQFDRPFMGRHIDDPYLYEDSVHGMKRPFYMTDPDPNYMGPARVRPRLDYTDPAVFPGSRYNDSIAAGREQYSHDYHGADYGGGPYSSFYGGDNSYGRRYYY 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00128 918 SUPERFAMILY RNA-binding domain, RBD 479 647 IPR035979 GO:0003676
Accr9g00128 918 Gene3D - 372 479 IPR012677 -
Accr9g00128 918 CDD RRM_SF 581 645 - -
Accr9g00128 918 MobiDBLite consensus disorder prediction 150 198 - -
Accr9g00128 918 MobiDBLite consensus disorder prediction 1 64 - -
Accr9g00128 918 CDD RRM_SF 403 472 - -
Accr9g00128 918 FunFam Heterogeneous nuclear ribonucleoprotein Q 566 719 - -
Accr9g00128 918 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 579 661 IPR000504 GO:0003723
Accr9g00128 918 MobiDBLite consensus disorder prediction 328 344 - -
Accr9g00128 918 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 403 471 IPR000504 GO:0003723
Accr9g00128 918 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 581 644 IPR000504 GO:0003723
Accr9g00128 918 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 483 550 IPR000504 GO:0003723
Accr9g00128 918 FunFam Heterogeneous nuclear ribonucleoprotein Q 481 565 - -
Accr9g00128 918 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 401 479 IPR000504 GO:0003723
Accr9g00128 918 Gene3D - 480 565 IPR012677 -
Accr9g00128 918 MobiDBLite consensus disorder prediction 218 383 - -
Accr9g00128 918 SUPERFAMILY RNA-binding domain, RBD 397 473 IPR035979 GO:0003676
Accr9g00128 918 MobiDBLite consensus disorder prediction 1 132 - -
Accr9g00128 918 Gene3D - 571 676 IPR012677 -
Accr9g00128 918 MobiDBLite consensus disorder prediction 304 327 - -
Accr9g00128 918 MobiDBLite consensus disorder prediction 226 256 - -
Accr9g00128 918 SMART rrm1_1 580 655 IPR000504 GO:0003723
Accr9g00128 918 SMART rrm1_1 482 562 IPR000504 GO:0003723
Accr9g00128 918 SMART rrm1_1 402 475 IPR000504 GO:0003723
Accr9g00128 918 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 234 918 - -
Accr9g00128 918 MobiDBLite consensus disorder prediction 267 303 - -
Accr9g00128 918 CDD RRM_SF 483 561 - -
Accr9g00128 918 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 481 566 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00128 Accr-Chr9 1459126 1463840 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00128 403 647 Eukaryotic Initiation Factors Gene Family AT2G23350 24.506 3.79e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00128 - - pcin:129322150 1369.37