Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00104 ATGGCGGAGCAGAGATCAACTGGTGTGGTTCAGTGGTTCAGCGATTCTAAAGGCTTTGGCTTTATCAAGCCCGACGATGGAGGAGAAGATCTCTTCGTTCATCATTCTTCCATCAGATCCGAAGGATATCGTAGTCTTGTCGAAGGCGATCGTGTCGAGTTCGTGATTGCCTCCGGTGACAACGACAGAACTAAAGCCATCGATGTTACTGGCCCCAATGGAACTGCTATACAAGCCAAAAAAGACAATGACGGTGGTCGCGATGGGGGCTATGGTTTTAGCGGTGGATGGAGAGGTGGGGATAGGCGTAATAGCGGAGGAGCTAGCGGTGCTGGCTGCTATCAGTGCGGCGATATCGGCCACTTAGCCAGAGATTGCAACCGGGGCAACAGTCCCGGTGGCCCTTCTTGTTTTAAATGCGGTGAAGTCGGGCACTTGGCTAGGGACTGTTCACTTGGAAATAATGGCGGCGGCGGCGGCGGGGCTTGCTTTAGGTGTCATGAGTATGGGCACATGGCGAGAGACTGCTCCAAGGGAAGCGGTGGGGGCGGTGGGGGTTGCTTTACATGTGGTGAAGTGGGTCACTTGGCCAGGGACTGCAACAAAGACAGCGGAAGGTACGGCGGCGACAGCGGTGGAGGACATGCGTGCTATAATTGTGGGAGGCGTGGGCATTTTGCGCGAGAGTGCCCTGATGCCTCCACTGCATGA 711 0.5527 MAEQRSTGVVQWFSDSKGFGFIKPDDGGEDLFVHHSSIRSEGYRSLVEGDRVEFVIASGDNDRTKAIDVTGPNGTAIQAKKDNDGGRDGGYGFSGGWRGGDRRNSGGASGAGCYQCGDIGHLARDCNRGNSPGGPSCFKCGEVGHLARDCSLGNNGGGGGGACFRCHEYGHMARDCSKGSGGGGGGCFTCGEVGHLARDCNKDSGRYGGDSGGGHACYNCGRRGHFARECPDASTA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00104 236 ProSiteProfiles Zinc finger CCHC-type profile. 113 126 IPR001878 GO:0003676|GO:0008270
Accr9g00104 236 Pfam Zinc knuckle 162 178 IPR001878 GO:0003676|GO:0008270
Accr9g00104 236 Pfam Zinc knuckle 136 151 IPR001878 GO:0003676|GO:0008270
Accr9g00104 236 Pfam Zinc knuckle 112 126 IPR001878 GO:0003676|GO:0008270
Accr9g00104 236 Pfam Zinc knuckle 186 201 IPR001878 GO:0003676|GO:0008270
Accr9g00104 236 Pfam Zinc knuckle 216 231 IPR001878 GO:0003676|GO:0008270
Accr9g00104 236 ProSiteProfiles Zinc finger CCHC-type profile. 163 178 IPR001878 GO:0003676|GO:0008270
Accr9g00104 236 SMART csp_8 7 72 IPR011129 GO:0003676
Accr9g00104 236 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Accr9g00104 236 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Accr9g00104 236 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Accr9g00104 236 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Accr9g00104 236 ProSiteProfiles Zinc finger CCHC-type profile. 137 150 IPR001878 GO:0003676|GO:0008270
Accr9g00104 236 SMART c2hcfinal6 186 202 IPR001878 GO:0003676|GO:0008270
Accr9g00104 236 SMART c2hcfinal6 112 128 IPR001878 GO:0003676|GO:0008270
Accr9g00104 236 SMART c2hcfinal6 136 152 IPR001878 GO:0003676|GO:0008270
Accr9g00104 236 SMART c2hcfinal6 162 178 IPR001878 GO:0003676|GO:0008270
Accr9g00104 236 SMART c2hcfinal6 216 232 IPR001878 GO:0003676|GO:0008270
Accr9g00104 236 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Accr9g00104 236 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Accr9g00104 236 Gene3D - 85 130 - -
Accr9g00104 236 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Accr9g00104 236 ProSiteProfiles Zinc finger CCHC-type profile. 187 200 IPR001878 GO:0003676|GO:0008270
Accr9g00104 236 SUPERFAMILY Retrovirus zinc finger-like domains 105 152 IPR036875 GO:0003676|GO:0008270
Accr9g00104 236 SUPERFAMILY Retrovirus zinc finger-like domains 155 203 IPR036875 GO:0003676|GO:0008270
Accr9g00104 236 PANTHER COLD SHOCK DOMAIN PROTEIN 2 180 232 - -
Accr9g00104 236 SUPERFAMILY Nucleic acid-binding proteins 4 71 IPR012340 -
Accr9g00104 236 MobiDBLite consensus disorder prediction 66 98 - -
Accr9g00104 236 SUPERFAMILY Retrovirus zinc finger-like domains 205 233 IPR036875 GO:0003676|GO:0008270
Accr9g00104 236 ProSiteProfiles Zinc finger CCHC-type profile. 217 232 IPR001878 GO:0003676|GO:0008270
Accr9g00104 236 Gene3D - 209 236 - -
Accr9g00104 236 Gene3D - 131 157 - -
Accr9g00104 236 Gene3D - 184 208 - -
Accr9g00104 236 Gene3D - 158 183 - -
Accr9g00104 236 Gene3D - 1 83 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00104 Accr-Chr9 1190945 1191655 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Accr9g00104 CSD 1.3e-23 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00104 K09250 - qsa:O6P43_033606 302.753