Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00071 ATGGATTTTGTGGCGAATCCTTTTCCCTTGCCTTCTTCCTCGCCGGGCTCCTTCGGGAGCTTCGTTGACAGGATTAAACGCATGAGCAGCCTCGCGGTTTCTGTTATAATTGGAAACATCTTATCTGCGATCTTGACATTTTGCTTTGCCTTAGTGGGAACACTATTGGGCGCCATGACAGGAGCTTTGATAGGCCAAGAGACTGAGAGTGGTTTCATTAGAGGAGCAGCAGTTGGTGCCATAACCGGAGCTGTTTTCTCCATTGAAGTATTTGAATCTTCTCTTGTTCTTTGGCAATCTGATGAATCTGGGATTGGGTGTCTTTTATATCTGATTGATGTCATTGCTAGCCTACTGAGTGGGAGACTTGTGCGTGAGAGGATTGGCCCTGCCATGTTAAGTGCTGTCCAAAGTCAGATGGGTGCTGTTGAAACAAACTTTGAGGAGGTTCAGAACATATTTGACACTGGTGGTTGCAAGGGTTTAACAGGAGATTCTGTTGAAAAGATCCCAAAGATCACAATCACACATGATAATAATATTGATGCTTGGGGTGAAAGAGTTTCTTGTTCAGTCTGCCTCCAGGACTTTCAGCCTGGAGAGACAGTTAGAAGTTTGCCCCATTGCCATCATATGTTCCACCTACCATGCATTGACAAGTGGCTCTTCAGGCACGGTTCATGTCCGTTATGCAGAAGGGATCTGTAA 708 0.4548 MDFVANPFPLPSSSPGSFGSFVDRIKRMSSLAVSVIIGNILSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAITGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETNFEEVQNIFDTGGCKGLTGDSVEKIPKITITHDNNIDAWGERVSCSVCLQDFQPGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00071 235 SUPERFAMILY RING/U-box 189 235 - -
Accr9g00071 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 235 IPR013083 -
Accr9g00071 235 SMART ring_2 190 231 IPR001841 -
Accr9g00071 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 234 IPR044523 -
Accr9g00071 235 Pfam YMGG-like Gly-zipper 49 85 IPR027367 -
Accr9g00071 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Accr9g00071 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Accr9g00071 235 CDD RING-H2_NIPL1-like 189 232 - -
Accr9g00071 235 Pfam Ring finger domain 189 232 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00071 Accr-Chr9 864688 866152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00071 20 235 C3H Transcription Factor Family AT5G66070 77.778 8.31e-118 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00071 - - lja:Lj2g3v1670720.1 401.364