Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00062 ATGGCGGATTCTCCTCTCAGAAAGACTTCAAGGTCACCGTCCCCATGGAGAGCCCAGTCAAGGTCGAGATCCAGGTCAAAGACTCCGCCCAGGGCTAGGTCCAGGTCTCGTTCTAGATCAAGATCCTGGTCAAGACACAGGCCGAGGTCCCGTTCAAGAAGCCGAGGCAGATCAAGATCAAGAAGTCATGGAAGGTCTGAAGTTGTAAATCCTGGGAATACTCTATATGTTACTGGCCTATCTTCAAGGGTTACTGAGAGGAACCTAGAAGAGCACTTCTCTAAGGAAGGAAAGGTTGCTTCATGTTTCCTGGTGGTGGAGCCTCGTACACGTATTTCCCGTGGTTTTGCTTTTGTTACGATGGATACTGTTGAGGATGCTAACCGCTGTATCAAGTACCTTAATCAATCTGTACTTGAAGGCCGCTATATTACAGTTGAGCAGTCACGGAGGAAAAGGGCTAGAACTCCTACTCCAGGGCACTATCTTGGTCTCAAAAGCACTAGAGACTATGGTTATCGTGGTGATCGTGGCGATCGTAGTGATCGTGGAAGGTACCGTGGTGGGTCAGGTCGTGATGACTATGCTTATCGTAGGTCTCCTAGGCACTCACCATACCGAGGCGGTCGGGATTCATCACTGCGGCATTCACCCTATGGTGGAAGATCTCGGAGGGACAGATCGAGGTCCCTCCCTTATTCTCCTTATGGTAGTCCAGACAGGAAGTACCCTCGGGGGTCTAGGTGA 747 0.5047 MADSPLRKTSRSPSPWRAQSRSRSRSKTPPRARSRSRSRSRSWSRHRPRSRSRSRGRSRSRSHGRSEVVNPGNTLYVTGLSSRVTERNLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTVEDANRCIKYLNQSVLEGRYITVEQSRRKRARTPTPGHYLGLKSTRDYGYRGDRGDRSDRGRYRGGSGRDDYAYRRSPRHSPYRGGRDSSLRHSPYGGRSRRDRSRSLPYSPYGSPDRKYPRGSR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00062 248 SMART rrm1_1 74 147 IPR000504 GO:0003723
Accr9g00062 248 SUPERFAMILY RNA-binding domain, RBD 31 149 IPR035979 GO:0003676
Accr9g00062 248 Gene3D - 10 157 IPR012677 -
Accr9g00062 248 MobiDBLite consensus disorder prediction 1 74 - -
Accr9g00062 248 MobiDBLite consensus disorder prediction 148 248 - -
Accr9g00062 248 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 157 - -
Accr9g00062 248 MobiDBLite consensus disorder prediction 1 23 - -
Accr9g00062 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 151 IPR000504 GO:0003723
Accr9g00062 248 MobiDBLite consensus disorder prediction 170 210 - -
Accr9g00062 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 144 IPR000504 GO:0003723
Accr9g00062 248 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 60 231 - -
Accr9g00062 248 MobiDBLite consensus disorder prediction 24 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00062 Accr-Chr9 771344 774242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00062 72 158 Eukaryotic Initiation Factors Gene Family AT1G49760 32.184 1.62e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00062 K12897 - gmx:100527350 292.352