Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00047 ATGGTCATTCCCGATCACAACAATCATAACCTAATCAAACCCACAAATTTCCAGGAAATGGGAACCAGGAAGTTTGGGAACAACAGAAGAGCGTTAAGCGTGATAAATCAGAGTCTAGTGGAGGGTCGAGCTTATCCCTGCGTCGTTAACAAGAGGGGATTGCCTGATAAACATGAAATTTGTGAAAAGAAGCAGGCGGATCCAGTGCATCGACCGATCACCAGGAGATTTGCTGCTCAGATTGCTAGCACGCAACAATCTCACGCTGAGGAAAATAAGAAGCCAAATACGGTAATTCCAAACGGGAATGACTTTGGAGATGTCATATTCATAGACGATGAACACAAGTCACCATTAGATCAGCCAGTGCCCATGTCATTGGAGAAAACCGAATCAACAGATGATGAAGTGGATCAGATGGAAGAAGTTGAGATGGAAGATATAATTGGAGAGCCTATTGTGGACATCGATTCTGGTGATGCCAATAATCCTCTTGCTGTGGTAGATTATGTTGACGAACTTCATGACTACTACAGAGAAATGGAGAGTATTAGCTGTGTCGCACCGAATTATATGGCACAGCAAGATGACATTAATGAAAGGATGAGGGCTATACTGATTGACTGGCTTATTGAGGTTCACGACAAATTTGACCTCATGCATGAGACTATGTTCCTTACCGTTAATCTCATAGATAGGTTTTTGGCAAAGCAGAACGTGATCAGAAAGAAACTTCAGCTGGTTGGCTTGGTTGCAATGCTTTTGGCATGCAAGTATGAGGAAGTTTCCGTGCCCGTAGTAGGGGATCTGATCCTTATATCGGACAAAGCTTACACAAGGAAGGAAGTTCTAGAAATGGAGAAGTTGATTCTCAACACATTGCAGTTTAACGTGTCAGTGCCAACTCCATATGTTTTTATGAGGAGGTTCCTGAAGGCAGCTGAAGCAGATAAGAAACTTGAGCTAGCAGCTTTCTTCTTGATAGAACTATCTCTTGTGGAATATGAGATGCTGAAGTTCCCACCATCGATGCTTGCTGCAGCTGCAGTCTATGCAGCTCAATGTACTACTTATGGTTTCAAACAGTGGAGTAAGACATGCGAATGGCACACCAACTTCTCGGAAGATCAGCTATTAGATTGCTCAAGGATGATGGTTGAGTTCCACCAGAAGGCAGGGACGGGAAAGCTTACAGGGGTATATAGGAAGTACTGCTCATCCAAGTTCAGCCACATTGCAAAATGTGAGCCGGCAAGTTTTCTTCTGGAGAACCAGCTATAG 1281 0.4356 MVIPDHNNHNLIKPTNFQEMGTRKFGNNRRALSVINQSLVEGRAYPCVVNKRGLPDKHEICEKKQADPVHRPITRRFAAQIASTQQSHAEENKKPNTVIPNGNDFGDVIFIDDEHKSPLDQPVPMSLEKTESTDDEVDQMEEVEMEDIIGEPIVDIDSGDANNPLAVVDYVDELHDYYREMESISCVAPNYMAQQDDINERMRAILIDWLIEVHDKFDLMHETMFLTVNLIDRFLAKQNVIRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMEKLILNTLQFNVSVPTPYVFMRRFLKAAEADKKLELAAFFLIELSLVEYEMLKFPPSMLAAAAVYAAQCTTYGFKQWSKTCEWHTNFSEDQLLDCSRMMVEFHQKAGTGKLTGVYRKYCSSKFSHIAKCEPASFLLENQL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00047 426 ProSitePatterns Cyclins signature. 203 234 IPR006671 -
Accr9g00047 426 SUPERFAMILY Cyclin-like 162 298 IPR036915 -
Accr9g00047 426 FunFam G2/mitotic-specific cyclin-1 295 413 - -
Accr9g00047 426 PIRSF Cyclin_A_B_D_E 6 426 IPR046965 GO:0016538|GO:0044772
Accr9g00047 426 SMART Cyclin_C_2 301 418 IPR004367 -
Accr9g00047 426 SUPERFAMILY Cyclin-like 300 418 IPR036915 -
Accr9g00047 426 Gene3D - 174 414 - -
Accr9g00047 426 PANTHER CYCLINS 126 396 IPR039361 -
Accr9g00047 426 FunFam G2/mitotic-specific cyclin 187 294 - -
Accr9g00047 426 Gene3D - 187 299 - -
Accr9g00047 426 CDD CYCLIN_AtCycB-like_rpt1 150 296 - -
Accr9g00047 426 Pfam Cyclin, N-terminal domain 175 298 IPR006671 -
Accr9g00047 426 Pfam Cyclin, C-terminal domain 301 417 IPR004367 -
Accr9g00047 426 CDD CYCLIN_AtCycB-like_rpt2 301 417 - -
Accr9g00047 426 SMART cyclin_7 305 387 IPR013763 -
Accr9g00047 426 SMART cyclin_7 208 292 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00047 Accr-Chr9 551590 554788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00047 1 422 Core Cell Cycle Gene Families AT1G20610 57.506 1.20e-176 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00047 K21777 - qsa:O6P43_033528 651.358