Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00021 ATGCCTCCAGCCCTCCGATTCCTCAATTCTGTCGACCGCCCCGCTCCCCCGCCCGAGCCCGTCGCCGTCGAATCCGACTTCGTCGTTATTCTCGCCGCCCTCCTCTGCGCCCTCATATGCGTCGTCGGCCTCATCGCCGTCGCCCGCTGCGCCTGGCTCCGCCGCGGATCCGCCTCCTCCCCCGCCCGGGCTCTGGCCAACAAGGGTCTCAAGAAGAAAGTTCTGCAGTCGCTCCCGAGATTCACCTACGTGAACGGAAGTCCAAATAAGTGGGTGGTGACGTCCGAGTGCGCGATTTGCCTGGGGGAGTTCACCGACGGGGACGAGATCCGGGTCCTTCCTCAGTGCGGACACGGCTTTCACATGGCCTGCATCGACACGTGGCTGGGGTCCCACTCTTCGTGCCCCTCTTGTCGGCAAATTCTGGCGGTGGCCAGGTGCCAGAGGTGCGGGCAGTACCCGGCGGGATCCGCCGGTGAAGCTGAGCTGAAGTCCAGAGAGGACGGCAATGCCGCTGCGCCTGCGAATCATAACATAAACAGCGGGTTTAATAATTTCTTGCCTTGA 567 0.6296 MPPALRFLNSVDRPAPPPEPVAVESDFVVILAALLCALICVVGLIAVARCAWLRRGSASSPARALANKGLKKKVLQSLPRFTYVNGSPNKWVVTSECAICLGEFTDGDEIRVLPQCGHGFHMACIDTWLGSHSSCPSCRQILAVARCQRCGQYPAGSAGEAELKSREDGNAAAPANHNINSGFNNFLP 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00021 188 CDD RING-H2_EL5-like 96 139 - -
Accr9g00021 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 144 IPR013083 -
Accr9g00021 188 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 21 151 - -
Accr9g00021 188 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Accr9g00021 188 Pfam Ring finger domain 96 139 IPR001841 -
Accr9g00021 188 FunFam E3 ubiquitin-protein ligase ATL6 58 145 - -
Accr9g00021 188 SMART ring_2 97 138 IPR001841 -
Accr9g00021 188 SMART FANCL_C_2 93 147 - -
Accr9g00021 188 SUPERFAMILY RING/U-box 76 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00021 Accr-Chr9 300301 300867 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00021 5 150 C3H Transcription Factor Family AT1G20823 61.875 4.13e-61 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00021 - - pcin:129322223 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00021 9 300301 300867 Accr10g01665 10 40645034 40645687 CCT
Accr9g00021 9 300301 300867 Accr9g00021 9 300301 300867 ECH