Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00007 ATGAGTAATACCAACGAAAACGAGGAATCTGGACAGGATGTGCCCGAGAGTGGCGACCAAAGCAAGCAATTAGTTGATGCACAGGTTCAACTTGAGGCTTCTTCTACTTCTGTTCCAGAAGAGACAGCTACGAATCGTGTTGAAAATGTAAAGGTAGAGGCAACTGCTGATAATAAAAATCTAGAACCAGAGGTTATGTCGGAGGGTACTCAACAACAAGAAGATCATAATATTCTCCACTCCGTCCCAGTAGAATCCAATGCTCAACTTCTGGTTAAAACTGAGTCAGAGCACGTATCAGATGTGAAGAGTGAGGTCAAAGAATTTTCTCAGACAGATGCGGGCGTAGAGAGTTATGATGTTGAAGGTGAGAAAAATGCTGATTCAGTTGAAACAGTTAAGAATGTCAAGCCTGAAGCTTGTGACGTCGCTGCTAGTAAAACTTGCAACAATGGTGATTCCACACCCATGGGTCGTAACGAACCTGCAACACCGCAACCTGTTCCTGTTGATACAAAAGCTGGGATCGAGAATGACATGAAAGTTGAGACTAAGGTCCACGAAGAGCTTGCTGCAACACTTGTAGATAAAGGGAATTCAAACACAAAGCACTCGTTTTTAGATGTTGACTATGATGGAAATGAGTCAGGTACCGAAGAAGATCAGTCTGCTTTTATGAAGGAGCTTGAAAATTTCTTTAGGGAGAGGAGCATGGAATTTAAACCCCCCAAGTTCTATGGAGAGGGACTTAATTGTCTTAAGTTGTGGAGAGCAGTGACCAGATTGGGTGGCTATGACAAGGTAACCTCATGTAAGTTATGGCGGCAAGTTGGAGAGTCTTTCAAGCCTCCAAAGACATGTACAACTGTATCATGGACGTTTCGAGGATTTTATGAAAAGGCTCTTCTTGATTATGAAAGGCATAAAACGAAAGGTGGTGAGCTTACTGTTCCTATTGCTTCTCATTCAGAGCCTATAAATATTGAAAATCAGGCTTCAGCATCAGGTAGAGCACGGAGAGATGCTGCAGCACGGGCTATGCAAGGTTGGCACTCACAACGTCTTCTTGGTAACGGTGAAGATAGGACGTCCATGCCCATGCAGAAGCGTGAAAAGCAGCTTAAAAGCATCAATGTACTAAAACGTAAGAAACCATCTTACCTGGATAATGCAGTCAAAGCAGCTCGCAGTAAACCATCAAAGCCACAATTGGATACAGCAGTTGTTGATATTGGACCTCCGGCTGATTGGGTAAAGATAAATGTCCAAAAAACTAAAGATTGTTTTGAGGTCTATGCATTAGTTCCTGGCCTTCTGCGAGAAGAGGTTCGTGTTCAATCAGACCCAGCAGGACGCTTGGTCATTAGTGGTGAACCTGAGCATCCCGATAATCCTTGGGGGGTGACACCTTTCAAAAAGGTCGTAAGCTTGCCTTCAAGGATTGATCCTCATCAGACATCAGCTGTGGTTACATTGCACGGGCAGCTGTTTGTTCGGGTCCCATTTGAGCAATCAGAGTAG 1521 0.4392 MSNTNENEESGQDVPESGDQSKQLVDAQVQLEASSTSVPEETATNRVENVKVEATADNKNLEPEVMSEGTQQQEDHNILHSVPVESNAQLLVKTESEHVSDVKSEVKEFSQTDAGVESYDVEGEKNADSVETVKNVKPEACDVAASKTCNNGDSTPMGRNEPATPQPVPVDTKAGIENDMKVETKVHEELAATLVDKGNSNTKHSFLDVDYDGNESGTEEDQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTKGGELTVPIASHSEPINIENQASASGRARRDAAARAMQGWHSQRLLGNGEDRTSMPMQKREKQLKSINVLKRKKPSYLDNAVKAARSKPSKPQLDTAVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00007 506 SUPERFAMILY HSP20-like chaperones 415 502 IPR008978 -
Accr9g00007 506 MobiDBLite consensus disorder prediction 1 74 - -
Accr9g00007 506 FunFam AT-rich interactive domain-containing protein 3 398 506 - -
Accr9g00007 506 Gene3D - 219 317 IPR036431 GO:0003677
Accr9g00007 506 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 64 505 IPR045147 GO:0006357
Accr9g00007 506 FunFam AT-rich interactive domain-containing protein 3 219 318 - -
Accr9g00007 506 MobiDBLite consensus disorder prediction 147 172 - -
Accr9g00007 506 ProSiteProfiles ARID domain profile. 219 310 IPR001606 GO:0003677
Accr9g00007 506 SMART bright_3 220 311 IPR001606 GO:0003677
Accr9g00007 506 MobiDBLite consensus disorder prediction 1 51 - -
Accr9g00007 506 CDD ARID 221 306 - -
Accr9g00007 506 Pfam Hsp20/alpha crystallin family 423 505 IPR002068 -
Accr9g00007 506 SMART ARID_2 216 306 - -
Accr9g00007 506 Pfam ARID/BRIGHT DNA binding domain 222 306 IPR001606 GO:0003677
Accr9g00007 506 MobiDBLite consensus disorder prediction 349 370 - -
Accr9g00007 506 CDD ACD_sHsps_p23-like 425 501 - -
Accr9g00007 506 Gene3D - 405 506 IPR008978 -
Accr9g00007 506 MobiDBLite consensus disorder prediction 147 161 - -
Accr9g00007 506 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 406 506 IPR002068 -
Accr9g00007 506 SUPERFAMILY ARID-like 213 323 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00007 Accr-Chr9 167820 177733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00007 99 504 ARID Transcription Factor Family AT1G76510 49.543 3.21e-124 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Accr9g00007 HSP20 7.2e-06 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00007 - - pcin:129284429 895.96