LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr8g02484	ATGGCTGGCGTATCCCTCCAGTGCGGTGACTGTGGAGCGCTATTGAGGTCCGTACAAGAAGCTCAGGAGCACGCAGACCTTACCTCCCACTCCAACTTCTCCGAATCGACTGAAGCTGTTCTCAACCTTGTTTGCTCCACTTGTGGCAAGCCATGCCGATCCAAAACCGAGAGTGATTTGCATACAAAAAGAACTGGGCATAGCGAATTTGTTGATAAGACATCTGAGACAGCGAAACCAATAAGTTTGGAGGTTCCAAAAGTGGATGCAATGTCTAACGAAGATGCCACTGCAACCACTGACCAACCTGATGAAATGGTTGTTCCTGAGGTTGACAAAAAGGTGCTTGAGGAACTTGAATCAATGGGTTTTCCAACTGCACGTGCAACACGTGCATTGCATTATTCTGGTAATGCTGGCCTTGAGGCTGCTGTGAATTGGGTAGTAGAGCATGAGAATGACCCTGACATTGATCAGATGCCCCTGGTACCTGCAAACACCAAAGTTGAGGCTCCTAAACCTTCTCTTACACCAGAACAACTGAAAGCTAAACAACAGGAACTCAGGGAGAGGGCTCGCAAGAAGAAAGAAGAGGAAGAGAAGAGAATGGAAAGAGAAAGAGAAAAGGAAAGAATTCGTATAGGCAAGGAATTACTGGAAGCAAAAAGAATTGAAGAGGAGAATGAGAGAAAACGGTTGCTGGCTCTGCGAAAAGCTGAGAAAGAGGAAGAGAGAAGGGCTAGGGAGAAAATCAGGCTGAAGTTGGAAGAAGACAAGGCTGAAAGAAGGCGAAGACTTGGATTACCTCCTGAAGAACCATCAGCTCCCAAACCGTCAAATGTTGTGGAGGAGAAAAAGAGTTCATTGCCAGTTCGACCTGCTACAAAAGCTGAGCAAATGAGGGAGTGCTTGCGTTCTCTCAAGCAGAACCACAAGGATGATGATGCAAGAGTAAAGAGAGCGTTCCAGACTCTCCTGACCTATGTGGGGAATGTGGCCAAAAGTCCGGACGAGGAAAAATTTAGAAGAATAAGACTGAGCAACCAAACTTTTCAGGAAAGAGTTGGTGCCTTGAAAGGGGGAATTGATTTCCTGGAAATTTGTGGGTTTGAGAAAGTCGAAGGGGGAGAGTTTCTGTTTTTGGCTAGGGACAAGGTTGACAAGGCAGTCCTCAATTCTGCTGGCTCTGAACTCGACTCTGCCATCAAAAATCCCTTTTTTGGGGTTCTTTAG	1233	0.4631	MAGVSLQCGDCGALLRSVQEAQEHADLTSHSNFSESTEAVLNLVCSTCGKPCRSKTESDLHTKRTGHSEFVDKTSETAKPISLEVPKVDAMSNEDATATTDQPDEMVVPEVDKKVLEELESMGFPTARATRALHYSGNAGLEAAVNWVVEHENDPDIDQMPLVPANTKVEAPKPSLTPEQLKAKQQELRERARKKKEEEEKRMEREREKERIRIGKELLEAKRIEEENERKRLLALRKAEKEEERRAREKIRLKLEEDKAERRRRLGLPPEEPSAPKPSNVVEEKKSSLPVRPATKAEQMRECLRSLKQNHKDDDARVKRAFQTLLTYVGNVAKSPDEEKFRRIRLSNQTFQERVGALKGGIDFLEICGFEKVEGGEFLFLARDKVDKAVLNSAGSELDSAIKNPFFGVL	410

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr8g02484	410	CDD	PUB_UBA_plant	304	410	-	-
	Accr8g02484	410	ProSitePatterns	Zinc finger C2H2 type domain signature.	45	67	IPR013087	-
	Accr8g02484	410	Coils	Coil	181	213	-	-
	Accr8g02484	410	Pfam	PUB domain	317	388	IPR018997	-
	Accr8g02484	410	PANTHER	F13M7.16 PROTEIN	1	410	-	-
	Accr8g02484	410	MobiDBLite	consensus disorder prediction	262	298	-	-
	Accr8g02484	410	SMART	PGNneu	320	383	-	-
	Accr8g02484	410	Coils	Coil	216	261	-	-
	Accr8g02484	410	SUPERFAMILY	PUG domain-like	294	406	IPR036339	-
	Accr8g02484	410	Gene3D	-	302	400	-	-
	Accr8g02484	410	MobiDBLite	consensus disorder prediction	168	209	-	-
	Accr8g02484	410	Pfam	UBA/TS-N domain	113	147	IPR015940	-
	Accr8g02484	410	ProSiteProfiles	Ubiquitin-associated domain (UBA) profile.	110	151	IPR015940	-
	Accr8g02484	410	SMART	uba_6	112	150	IPR015940	-
	Accr8g02484	410	CDD	UBA_PUB_plant	110	158	-	-
	Accr8g02484	410	ProSitePatterns	Zinc finger C2H2 type domain signature.	8	30	IPR013087	-
	Accr8g02484	410	Gene3D	-	112	158	-	-
	Accr8g02484	410	SUPERFAMILY	UBA-like	100	164	IPR009060	GO:0005515
	Accr8g02484	410	MobiDBLite	consensus disorder prediction	183	209	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr8g02484	Accr-Chr8	48571665	48579287	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr8g02484	93	410	C2H2 Transcription Factor Family	AT1G04850	77.882	1.83e-152	432

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr8g02484	K24348		-	jre:109003439	619.002