Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02471 ATGAGCAGCTCAGGACCTAGGGAAAGCCAAGAGGCTGCTAGAGATTTTCAAAATCAGCAAATCGTGTTTTCTGACTGGGACCTCAACCTTCCTCTTCTCGAGGAGAGCCTGGATGCAGCAGCTCGAGGATCAGCCCTTGATAATGAAAATTTGCTGTTGCAGATGGGTGATGCTGAATCTGATGATGTTGCTATAATTTCCCCAAGAAAATTTGAAGAAGCAAAGAACAATTCTCGAAGAAAAAAAGCTTGTCAAAGCTATGCCATTATACAAGTGTTTGATGAAGATAGAGGAAACATTCCAGAAGTGACAGCAGATGCCGTTTCTCACCCTATTATTGACAACAGACATGAAAATCCCCAAAACCAAGCAATTGTGGACTGTGAGCTGCACCTACGTGTGAAAGACAGCAGGGTAGCCAAGGCGCTGTCTCCAAGTGGCTCGCTGCCTGAGGAAGCCACCTTCAGTTGCACAATTTGCATGGGCCAGCTGATTGAAGAAACATCAACCAAGTGTGGCCACATTTTCTGCAAGAAGTGCATTCAGGCAGCCATAGCTGCTCAACACAAATGTCCCACCTGCAGGCGTAAACTTAGAAAGTCTGACATGTTTAGGGTCTACCTTCCAACAGCTAACTAG 639 0.457 MSSSGPRESQEAARDFQNQQIVFSDWDLNLPLLEESLDAAARGSALDNENLLLQMGDAESDDVAIISPRKFEEAKNNSRRKKACQSYAIIQVFDEDRGNIPEVTADAVSHPIIDNRHENPQNQAIVDCELHLRVKDSRVAKALSPSGSLPEEATFSCTICMGQLIEETSTKCGHIFCKKCIQAAIAAQHKCPTCRRKLRKSDMFRVYLPTAN 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02471 212 PANTHER ELFLESS, ISOFORM B 21 211 - -
Accr8g02471 212 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Accr8g02471 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 210 IPR013083 -
Accr8g02471 212 SUPERFAMILY RING/U-box 156 200 - -
Accr8g02471 212 Pfam Zinc finger, C3HC4 type (RING finger) 157 194 - -
Accr8g02471 212 ProSiteProfiles Zinc finger RING-type profile. 157 195 IPR001841 -
Accr8g02471 212 SMART ring_2 157 194 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02471 Accr-Chr8 48468309 48470289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02471 57 211 C3H Transcription Factor Family AT5G48655 40.123 1.78e-25 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02471 K22651 - cave:132178604 159.073