Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02362 ATGACATCATCATCCCGTGGCCCCAAGACTGCATTCCCTGTGACAGAGGCAGCTTCGAACTATCATCTGTATCCTCCTGCTCTTGAAAAATATGATGATGTCGCGGCTGATCCCAAGCTCTTTATGCAAACCTTGGAGAAGCTCCACCATTCTATGGGTTCCAAGTTCATGATTCCCATTATAGGGGGAAAAGAACTAGATTTGCATCAGCTTTTTTTGGAAGTGACTTCTCGTGGAGGCATTGAGAAAATTATAAGGGAGAGAAGATGGAAAGAAATAACTGCTGGTTTCAAATTTCCACCTACAGCTACAAATGCTTCTTTTGTGTTGCGGAAGTACTATGGTTCATTGCTTTACCACTATGAACAAATATACTACTTTAAGGCCCCAGGATGGAACCGTGAACCTTCTGATGTTGTGCAGGGTCCATCGCCAGTGCCGGTTCCCACCCCAAATGTGCAGCAGTTTTTGCATCCCCAAGTTAATGCTTCTCAATTGCCTGAAGGAACTCCAGTGATTGGGGTGATTGATGGAAAGTTTGAAAGTGGGTATCTTGTTACTGTCACAGTGGGTTCAGAGAAACTTAAAGGTGTTCTCTATCAGGCTCCACAGAACCTCGCGTTGCCAACAGTGCTGCAACATGAGCAATATGCAAGATTGAAACCACTCCACCATGGGAAGGACAGAGAAATCAGTAAGATAATTGGTGAACTCTGGAACAAATTAATGGAGCCAGAGAAAGCAGTTTATCAAGAGAAGGCACTCAAGGATAAAGAGAGGTACCAAGCTGAAATGGAGCATTATAGGGAGAAACTGAAAACAGGCCAGGGTATAGGTGATGCTGTGCCGTTACAAGAACAAATTCCCGATAAGGATATGATGGACGCCGACTTGAAAGTGGACGAAACCAAGGGAGCAGAGTCTCCTCAAACACCTGATAAGAGCTGTTCTGGTGAGAGTGACTCTGAAGATGATAAAGGTACAGAGCATAATATGGACGTGGATGCATCTGCCGGCATGGTAGGAGTGGGAGCTAGCCATCTGGGTGCAGAGAATCTATCAAAGGAGAAAGAAGGGAATGATGATGGAGGTCAACATGCTCAAAAGATGGATGAGAGCCCAAGCATGATGGCTGTGTAG 1140 0.4518 MTSSSRGPKTAFPVTEAASNYHLYPPALEKYDDVAADPKLFMQTLEKLHHSMGSKFMIPIIGGKELDLHQLFLEVTSRGGIEKIIRERRWKEITAGFKFPPTATNASFVLRKYYGSLLYHYEQIYYFKAPGWNREPSDVVQGPSPVPVPTPNVQQFLHPQVNASQLPEGTPVIGVIDGKFESGYLVTVTVGSEKLKGVLYQAPQNLALPTVLQHEQYARLKPLHHGKDREISKIIGELWNKLMEPEKAVYQEKALKDKERYQAEMEHYREKLKTGQGIGDAVPLQEQIPDKDMMDADLKVDETKGAESPQTPDKSCSGESDSEDDKGTEHNMDVDASAGMVGVGASHLGAENLSKEKEGNDDGGQHAQKMDESPSMMAV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02362 379 SMART ARID_2 32 122 - -
Accr8g02362 379 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Accr8g02362 379 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 213 269 IPR009071 -
Accr8g02362 379 MobiDBLite consensus disorder prediction 317 332 - -
Accr8g02362 379 Gene3D High mobility group box domain 209 278 IPR036910 -
Accr8g02362 379 SUPERFAMILY ARID-like 33 128 IPR036431 GO:0003677
Accr8g02362 379 Coils Coil 251 271 - -
Accr8g02362 379 CDD HMG-box_AtHMGB9-like 215 268 - -
Accr8g02362 379 Pfam HMG (high mobility group) box 219 269 IPR009071 -
Accr8g02362 379 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 213 321 - -
Accr8g02362 379 Gene3D - 27 133 IPR036431 GO:0003677
Accr8g02362 379 MobiDBLite consensus disorder prediction 272 379 - -
Accr8g02362 379 SUPERFAMILY HMG-box 225 273 IPR036910 -
Accr8g02362 379 FunFam High mobility group B protein 15 29 141 - -
Accr8g02362 379 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Accr8g02362 379 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Accr8g02362 379 SMART bright_3 36 127 IPR001606 GO:0003677
Accr8g02362 379 MobiDBLite consensus disorder prediction 351 368 - -
Accr8g02362 379 SMART hmgende2 209 270 IPR009071 -
Accr8g02362 379 MobiDBLite consensus disorder prediction 290 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02362 Accr-Chr8 47238389 47241977 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02362 1 300 ARID Transcription Factor Family AT1G04880 48.518 1.79e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Accr8g02362 ARID 7.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02362 - - pcin:129308526 544.273