Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02361 ATGACATCATCATCCCGTGGCCCCAAGACTGCATTCCCTGTGACAGAGGCAGCTTCGAACTATCATCTGTATCCTCCTGCTCTTGAAAAATATGATGATGTCGCGGCTGATCCCAAGCTCTTTATGCAAACCTTGGAGAAGCTCCACCATTCTATGGGTTCCAAGTTCATGATTCCCATTATAGGGGGAAAAGAACTAGATTTGCATCAGCTTTTTTTGGAAGTGACTTCTCGTGGAGGCATTGAGAAAATTATAAGGGAGAGAAGATGGAAAGAAATAACTGCTGGTTTCAAATTTCCACCTACAGCTACAAATGCTTCTTTTGTGTTGCGGAAGTACTATGGTTCATTGCTTTACCACTATGAACAAATATACTACTTTAAGGCCCCAGGATGGAACCGTGAACCTTCTGATGTTGTGCAGGGTCCATCGCCAGTGCCGGTTCCCACCCCAAATGTGCAGCAGTTTTTGCATCCCCAAGTTAATGCTTCTCAATTGCCTGAAGCTTCTTCTGTAGGAACTCCAGTGATTGGGGTGATTGATGGAAAGTTTGAAAGTGGGTATCTTGTTACTGTCACAGTGGGTTCAGAGAAACTTAAAGGTGTTCTCTATCAGGCTCCACAGAACCTCGCGTTGCCAACAGTGCTGCAACATGAGCAATATGCAAGATTGAAACCACTCCACCATGGGAAGGACAGAGAAATCAGTAAGATAATTGGTGAACTCTGGAACAAATTAATGGAGCCAGAGAAAGCAGTTTATCAAGAGAAGGCACTCAAGGATAAAGAGAGGTACCAAGCTGAAATGGAGCATTATAGGGAGAAACTGAAAACAGGCCAGGGTATAGGTGATGCTGTGCCGTTACAAGAACAAATTCCCGATAAGGATATGATGGACGCCGACTTGAAAGTGGACGAAACCAAGGGAGCAGAGTCTCCTCAAACACCTGATAAGAGCTGTTCTGGTGAGAGTGACTCTGAAGATGATAAAGGTACAGAGCATAATATGGACGTGGATGCATCTGCCGGCATGGTAGGAGTGGGAGCTAGCCATCTGGGTGCAGAGAATCTATCAAAGGAGAAAGAAGGGAATGATGATGGAGGTCAACATGCTCAAAAGATGGATGAGAGCCCAAGCATGATGGCTGTGTAG 1152 0.4514 MTSSSRGPKTAFPVTEAASNYHLYPPALEKYDDVAADPKLFMQTLEKLHHSMGSKFMIPIIGGKELDLHQLFLEVTSRGGIEKIIRERRWKEITAGFKFPPTATNASFVLRKYYGSLLYHYEQIYYFKAPGWNREPSDVVQGPSPVPVPTPNVQQFLHPQVNASQLPEASSVGTPVIGVIDGKFESGYLVTVTVGSEKLKGVLYQAPQNLALPTVLQHEQYARLKPLHHGKDREISKIIGELWNKLMEPEKAVYQEKALKDKERYQAEMEHYREKLKTGQGIGDAVPLQEQIPDKDMMDADLKVDETKGAESPQTPDKSCSGESDSEDDKGTEHNMDVDASAGMVGVGASHLGAENLSKEKEGNDDGGQHAQKMDESPSMMAV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02361 383 SMART ARID_2 32 122 - -
Accr8g02361 383 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Accr8g02361 383 SUPERFAMILY HMG-box 229 277 IPR036910 -
Accr8g02361 383 MobiDBLite consensus disorder prediction 321 336 - -
Accr8g02361 383 Coils Coil 255 275 - -
Accr8g02361 383 CDD HMG-box_AtHMGB9-like 219 272 - -
Accr8g02361 383 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 217 273 IPR009071 -
Accr8g02361 383 SMART hmgende2 213 274 IPR009071 -
Accr8g02361 383 MobiDBLite consensus disorder prediction 276 383 - -
Accr8g02361 383 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 217 325 - -
Accr8g02361 383 SUPERFAMILY ARID-like 33 128 IPR036431 GO:0003677
Accr8g02361 383 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Accr8g02361 383 Pfam HMG (high mobility group) box 223 273 IPR009071 -
Accr8g02361 383 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Accr8g02361 383 SMART bright_3 36 127 IPR001606 GO:0003677
Accr8g02361 383 MobiDBLite consensus disorder prediction 355 372 - -
Accr8g02361 383 Gene3D High mobility group box domain 213 282 IPR036910 -
Accr8g02361 383 MobiDBLite consensus disorder prediction 294 312 - -
Accr8g02361 383 FunFam High mobility group B protein 15 29 141 - -
Accr8g02361 383 Gene3D - 27 133 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02361 Accr-Chr8 47238389 47241977 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02361 1 304 ARID Transcription Factor Family AT1G04880 48.787 1.08e-106 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Accr8g02361 ARID 7.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02361 - - pcin:129308526 550.821