Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02360 ATGACATCATCATCCCGTGGCCCCAAGACTGCATTCCCTGTGACAGAGGCAGCTTCGAACTATCATCTGTATCCTCCTGCTCTTGAAAAATATGATGATGTCGCGGCTGATCCCAAGCTCTTTATGCAAACCTTGGAGAAGCTCCACCATTCTATGGGTTCCAAGTTCATGATTCCCATTATAGGGGGAAAAGAACTAGATTTGCATCAGCTTTTTTTGGAAGTGACTTCTCGTGGAGGCATTGAGAAAATTATAAGGGAGAGAAGATGGAAAGAAATAACTGCTGGTTTCAAATTTCCACCTACAGCTACAAATGCTTCTTTTGTGTTGCGGAAGTACTATGGTTCATTGCTTTACCACTATGAACAAATATACTACTTTAAGGCCCCAGGATGGAACCGTGAACCTTCTGATGTTGTGCAGGGTCCATCGCCAGTGCCGGTTCCCACCCCAAATGTGCAGCAGTTTTTGCATCCCCAAGTTAATGCTTCTCAATTGCCTGAAGCTTCTTCTGTAGGAACTCCAGTGATTGGGGTGATTGATGGAAAGTTTGAAAGTGGGTATCTTGTTACTGTCACAGTGGGTTCAGAGAAACTTAAAGGTGTTCTCTATCAGGCTCCACAGAACCTCGCGTTGCCAACAGTGCTGCAACATGGTAGTGTTCCAGTCTATAATAGTAATACCTCATCTACTGCTTTGGGTGTCCATCGTCACCGACGCAAGAAATGTGAGATAAAAAAGAGAGACCCTGGTCATCCCAAACCTAATCGAAGCGGATACAATTTCTTCTTTGCAGAGCAATATGCAAGATTGAAACCACTCCACCATGGGAAGGACAGAGAAATCAGTAAGATAATTGGTGAACTCTGGAACAAATTAATGGAGCCAGAGAAAGCAGTTTATCAAGAGAAGGCACTCAAGGATAAAGAGAGGTACCAAGCTGAAATGGAGCATTATAGGGAGAAACTGAAAACAGGCCAGGGTATAGGTGATGCTGTGCCGTTACAAGAACAAATTCCCGATAAGGATATGATGGACGCCGACTTGAAAGTGGACGAAACCAAGGGAGCAGAGTCTCCTCAAACACCTGATAAGAGCTGTTCTGGTGAGAGTGACTCTGAAGATGATAAAGGTACAGAGCATAATATGGACGTGGATGCATCTGCCGGCATGGTAGGAGTGGGAGCTAGCCATCTGGGTGCAGAGAATCTATCAAAGGAGAAAGAAGGGAATGATGATGGAGGTCAACATGCTCAAAAGATGGATGAGAGCCCAAGCATGATGGCTGTGTAG 1293 0.4486 MTSSSRGPKTAFPVTEAASNYHLYPPALEKYDDVAADPKLFMQTLEKLHHSMGSKFMIPIIGGKELDLHQLFLEVTSRGGIEKIIRERRWKEITAGFKFPPTATNASFVLRKYYGSLLYHYEQIYYFKAPGWNREPSDVVQGPSPVPVPTPNVQQFLHPQVNASQLPEASSVGTPVIGVIDGKFESGYLVTVTVGSEKLKGVLYQAPQNLALPTVLQHGSVPVYNSNTSSTALGVHRHRRKKCEIKKRDPGHPKPNRSGYNFFFAEQYARLKPLHHGKDREISKIIGELWNKLMEPEKAVYQEKALKDKERYQAEMEHYREKLKTGQGIGDAVPLQEQIPDKDMMDADLKVDETKGAESPQTPDKSCSGESDSEDDKGTEHNMDVDASAGMVGVGASHLGAENLSKEKEGNDDGGQHAQKMDESPSMMAV 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02360 430 CDD HMG-box_AtHMGB9-like 253 319 - -
Accr8g02360 430 Coils Coil 302 322 - -
Accr8g02360 430 SMART ARID_2 32 122 - -
Accr8g02360 430 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Accr8g02360 430 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 253 320 IPR009071 -
Accr8g02360 430 MobiDBLite consensus disorder prediction 323 430 - -
Accr8g02360 430 FunFam High mobility group B protein 15 29 141 - -
Accr8g02360 430 Gene3D - 27 133 IPR036431 GO:0003677
Accr8g02360 430 SUPERFAMILY ARID-like 33 128 IPR036431 GO:0003677
Accr8g02360 430 FunFam High mobility group B protein 15 235 330 - -
Accr8g02360 430 Pfam HMG (high mobility group) box 253 320 IPR009071 -
Accr8g02360 430 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Accr8g02360 430 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 13 372 - -
Accr8g02360 430 MobiDBLite consensus disorder prediction 402 419 - -
Accr8g02360 430 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Accr8g02360 430 SUPERFAMILY HMG-box 240 324 IPR036910 -
Accr8g02360 430 SMART bright_3 36 127 IPR001606 GO:0003677
Accr8g02360 430 SMART hmgende2 252 321 IPR009071 -
Accr8g02360 430 MobiDBLite consensus disorder prediction 341 359 - -
Accr8g02360 430 Gene3D High mobility group box domain 237 330 IPR036910 -
Accr8g02360 430 MobiDBLite consensus disorder prediction 368 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02360 Accr-Chr8 47238389 47241977 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02360 1 351 ARID Transcription Factor Family AT1G04880 56.873 1.16e-125 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Accr8g02360 ARID 9.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02360 - - pcin:129308526 654.44