Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02352 ATGAATAATGTTAGAGGTAATAACAATGTGCAAAAATTCAAAGGCGTAGTACCTCAGCAAAATGGTCATTGGGGTGCTCAAATATATGCAAATCACCAAAGAATATGGCTTGGAACCTTCAAATCCGAACGTGAAGCCGCCATGGCTTATGACAGCGCCACCATCAAGCTCCGGAGCAGCGAGAGCCACCGGAATTTCCCGTGGAACGATCAAACGGTTCAAGAGCCTCTTTTCCAAAGCCATTACAGCACAGAAGCAGTCCTAAGCATGATCAGAGATGGAACTTATCGTTCAAAGTTTGCTTCTTTTCTCTTAAGCACCCTAACCCTAACCCTAAATAGCCGTGAACAAATAACAAGCGCCCGAAGTAATGGTGAGGAAAAATTCTCCTGCACCCAACTCTTCCAGAAGGAACTTACACCAAGTGACGTGGGCAAACTCAATAGGCTCGTCATCCCAAAGAAGCATGCAAGTAAATATTTCCCTTACGTATCTGGCACTACAGAAGAAGCCGACGATAATGATAATAATAATTACGGTACGACGACGACGACGGATATGATAAATAGTGACGTTGAGCTTGTGTTTTACGACAAGCTAATGAGGTCGTGGAAATTTAGGTACTGTTATTGGAGAAGCAGTCAAAGCTTTGTGTTTACGAGGGGTTGGAACAGGTTTGTGAAAGATAAGAGATTGAAGGCTAAGGATGTTGTTGTGTTTTCTAAGTGTGAGCCTATAATTGATATGGGGATTAATAATGGTGGTCAAGTGTTTTATTTGATTGATGTGATCTATACTAATGAAGATAATATAAATGAGAGCTCAAGGACACAGTCTTCTTTTGGGAAAATGTTGAGTTTGGACAATGGAACAGAAGAAGATGACGAAGAAGAAGATGATGATGAGACAAAGGAGAAAAAGGAAATATCGCTGCATTCTCCAACAGATGTTGCTGCACAAAAGGGTTTGAAGCTTTTTGGAGTAAGAATTAACGTAACTGAGAATTATTGA 1011 0.4085 MNNVRGNNNVQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEREAAMAYDSATIKLRSSESHRNFPWNDQTVQEPLFQSHYSTEAVLSMIRDGTYRSKFASFLLSTLTLTLNSREQITSARSNGEEKFSCTQLFQKELTPSDVGKLNRLVIPKKHASKYFPYVSGTTEEADDNDNNNYGTTTTTDMINSDVELVFYDKLMRSWKFRYCYWRSSQSFVFTRGWNRFVKDKRLKAKDVVVFSKCEPIIDMGINNGGQVFYLIDVIYTNEDNINESSRTQSSFGKMLSLDNGTEEDDEEEDDDETKEKKEISLHSPTDVAAQKGLKLFGVRINVTENY 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02352 336 Gene3D - 122 261 IPR015300 -
Accr8g02352 336 Pfam AP2 domain 12 59 IPR001471 GO:0003700|GO:0006355
Accr8g02352 336 MobiDBLite consensus disorder prediction 274 315 - -
Accr8g02352 336 ProSiteProfiles AP2/ERF domain profile. 12 67 IPR001471 GO:0003700|GO:0006355
Accr8g02352 336 SMART B3_2 135 255 IPR003340 GO:0003677
Accr8g02352 336 SUPERFAMILY DNA-binding pseudobarrel domain 133 242 IPR015300 -
Accr8g02352 336 Gene3D AP2/ERF domain 11 68 IPR036955 GO:0003700|GO:0006355
Accr8g02352 336 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 10 330 IPR044800 GO:0003700
Accr8g02352 336 SUPERFAMILY DNA-binding domain 12 69 IPR016177 GO:0003677
Accr8g02352 336 SMART rav1_2 12 73 IPR001471 GO:0003700|GO:0006355
Accr8g02352 336 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Accr8g02352 336 FunFam AP2 domain-containing protein RAP2.8 11 68 - -
Accr8g02352 336 CDD B3_DNA 134 240 IPR003340 GO:0003677
Accr8g02352 336 ProSiteProfiles B3 DNA-binding domain profile. 135 255 IPR003340 GO:0003677
Accr8g02352 336 Pfam B3 DNA binding domain 135 241 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02352 Accr-Chr8 47124260 47125270 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02352 8 263 RAV Transcription Factor Family AT1G51120 58.271 1.80e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Accr8g02352 B3 1.6e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02352 K09287 - qsu:111998385 348.591