Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02329 ATGGCTCAGAGTAACTGGGAAGCAGATAAGATGCTTGATGTTTATATCTACGATTACTTGGTGAAGAAAAAATTGCATAATACTGCCAAGTCATTCATGACTGAAGGGAAGGTTGCGCCAGATCCAGTGGCAATTGATGCTCCTGGGGGGTTTCTTTTTGAGTGGTGGTCTGTATTCTGGGATATTTTTATTGCAAGGACAAACGAGAAACATTCTGAGTCTGCTGCAGCATATTTGGAGGCTCAACAGATTAAAGCAAAAGAACAGCAGCAGCTGCAAATGCAGCAGTTGCAACTTATGCGTCAGGCTCATCTTCAAAGGAGGGATCCTAATCATCCTCCTCTTGGCGGTACTGTAAATGCTATTTCTTCTGAAGGAATGCTTGGGCAACCTACTGCCAGTGCATTGGCCGCGAAAATGTATGAGGAACGGATGAAACACTCTAACCCAATGGAAACTGAGACATCCCAACCACTTATAGATGCTAGAATGGCCCTTTTGAAGTCAACAACAAGTCATCCTGGTCAGATTGTTCAAGGAAATACTGGAAGTGTGACTGCAGCTTTGCAGCACATGCAGGCTCGAAATCAGCAAACTCCGCAGGACATTAAAAGTGAAGTCAGCATGGGCACAATGCAAAGATCTTTGCCCATGGATCCTTCTTCAATTTATGGGCAGGGTGCAATGCAGTCAAAACCAGGAATAGTAAATCCAGGAGTTGGTAATCTCACACTGAAAGGATGGCCTTTAACTGGTATAGATCAAATTCGACCAGGTTTAGGAGCGCAAGTTCAAAAACCTCTCCTTCAAAGTGCAAATCAGTTCCAGCTTTTGCCCCAACAACAACAACAACAACTCTTGGCACAGGTTCAGGCACAAGGAAATATTACCAGTTCACCAATGTATGCAGATATGGATCCTCAACGGCTGAGGGGATTAGCTAGAGGTGGTTTGAATGCAAAAGATGGCCAACCTATTGCAAATGATGGATCAATTGGTTCTCCAATGCAATCCACGTCATCTAAGATCAACCTGCCACAGATGCAACAATCTACCTCTCAGCAACAGCAGGATCCCTTGCACCCACAACAACTGCAGCAGAATAACCGGAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAACAGCACTGGTACAGGAAACACGATTGGCCCTTCTAATTCCCAGCCATCAACCCCATCTACTCATACTCCTTGTGATGGAGTAGCCATGGCTGGTAACTTGCAGAATGTTGGTGGTGTATCCAAAACTTTGATGATGTATGGTGCTGATGGCACAGGTGGTCTTGCATCATCCACAAATCAACTGTTGCAGGATGACATGGAACGTTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAGTCATTTCTTTCACATGATGATGGTGATGGAAGAGATTTGTTTGGCACCTTGAAACGGAGTGCTTCTGAGCACACAACAGATGCTTCAAAAGGCTTTTCCTTTAGTGAAGTCGGCTCCATACGCAAGAGCAATGGCAAAGTTGTTTGCTGTCACTTCTCAACAGATGGGAAGTTATTGGCCAGTGCTGGACATGACAAGAAGGTTTTTCTGTGGAACATGGAGACTCTAAGTACAGAGAGCACTTCAGAGGAACACACTCTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTTGCAACTTCTTCATTTGATACAACTGTGCGGCTTTGGGATGCTTCAGATCCAAACTACTTTTGTTTACAGACATACACGGGTCATACCTCTCATGTGATGTCCCTTGATTTCCACCCAAAGAAAAATGACCTTTTCTGTTCTTGCGATGCCAACAGTGAAATTCGCTATTGGAATATTAGTCAATATTCCTGCACTCGCGTTTCCAAGGGAGGCTCTGCACAGGTGAGGTTTCAGCCAAGAATAGGACATCGTCTGGCTGCAGCAGCTGGTAATGTTGTATCCCTCTATGATGTTGAGACTGACAGGCTGGTGCAGTCATTGCAGGGGCACACCACAGATGTGAATTCTGTTTGTTGGGATCACAGTGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAGAGTGTGGTCATTGGCCTCTGGGGAGTGCATTCACGAGCTTAGTTCTAGCGGGAACATGTCCAATTCTTGTGTTTTTCACCCAAGTTACTCCACTCTCTTGGTTATCGGAGGTTACCAGTCATTGGAGCTATGGAACATGGCAGAGAATAAATGCATGACAATACCAGCTCATGAGTGTGTGATATCGTCTTTAGCAGTATCAACAGTATCAGGAATGGTTGCTTCTGCAAGTCATGACAAGTCCGTCAAGATTTGGAAGTGA 2355 0.448 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAAAYLEAQQIKAKEQQQLQMQQLQLMRQAHLQRRDPNHPPLGGTVNAISSEGMLGQPTASALAAKMYEERMKHSNPMETETSQPLIDARMALLKSTTSHPGQIVQGNTGSVTAALQHMQARNQQTPQDIKSEVSMGTMQRSLPMDPSSIYGQGAMQSKPGIVNPGVGNLTLKGWPLTGIDQIRPGLGAQVQKPLLQSANQFQLLPQQQQQQLLAQVQAQGNITSSPMYADMDPQRLRGLARGGLNAKDGQPIANDGSIGSPMQSTSSKINLPQMQQSTSQQQQDPLHPQQLQQNNRKRKGPTSSGAANSTGTGNTIGPSNSQPSTPSTHTPCDGVAMAGNLQNVGGVSKTLMMYGADGTGGLASSTNQLLQDDMERFGDVGSLDDNVESFLSHDDGDGRDLFGTLKRSASEHTTDASKGFSFSEVGSIRKSNGKVVCCHFSTDGKLLASAGHDKKVFLWNMETLSTESTSEEHTLIITDVRFRPNSTQLATSSFDTTVRLWDASDPNYFCLQTYTGHTSHVMSLDFHPKKNDLFCSCDANSEIRYWNISQYSCTRVSKGGSAQVRFQPRIGHRLAAAAGNVVSLYDVETDRLVQSLQGHTTDVNSVCWDHSGDYLASVSQESVRVWSLASGECIHELSSSGNMSNSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECVISSLAVSTVSGMVASASHDKSVKIWK 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02329 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 670 710 IPR001680 GO:0005515
Accr8g02329 784 MobiDBLite consensus disorder prediction 330 405 - -
Accr8g02329 784 Pfam LisH 10 36 IPR006594 GO:0005515
Accr8g02329 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 588 623 - -
Accr8g02329 784 MobiDBLite consensus disorder prediction 315 410 - -
Accr8g02329 784 Pfam WD domain, G-beta repeat 584 621 IPR001680 GO:0005515
Accr8g02329 784 Pfam WD domain, G-beta repeat 666 701 IPR001680 GO:0005515
Accr8g02329 784 Pfam WD domain, G-beta repeat 750 784 IPR001680 GO:0005515
Accr8g02329 784 Pfam WD domain, G-beta repeat 507 534 IPR001680 GO:0005515
Accr8g02329 784 Pfam WD domain, G-beta repeat 547 576 IPR001680 GO:0005515
Accr8g02329 784 SUPERFAMILY WD40 repeat-like 496 784 IPR036322 GO:0005515
Accr8g02329 784 Gene3D - 471 635 IPR015943 GO:0005515
Accr8g02329 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 502 537 - -
Accr8g02329 784 SMART WD40_4 495 534 IPR001680 GO:0005515
Accr8g02329 784 SMART WD40_4 581 621 IPR001680 GO:0005515
Accr8g02329 784 SMART WD40_4 663 701 IPR001680 GO:0005515
Accr8g02329 784 SMART WD40_4 704 743 IPR001680 GO:0005515
Accr8g02329 784 SMART WD40_4 745 784 IPR001680 GO:0005515
Accr8g02329 784 SMART WD40_4 537 576 IPR001680 GO:0005515
Accr8g02329 784 SMART Lish 8 40 IPR006594 GO:0005515
Accr8g02329 784 Coils Coil 87 107 - -
Accr8g02329 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 544 576 - -
Accr8g02329 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 588 630 IPR001680 GO:0005515
Accr8g02329 784 ProSitePatterns Trp-Asp (WD) repeats signature. 521 535 IPR019775 -
Accr8g02329 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 576 IPR001680 GO:0005515
Accr8g02329 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 752 784 - -
Accr8g02329 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 502 543 IPR001680 GO:0005515
Accr8g02329 784 PRINTS G protein beta WD-40 repeat signature 563 577 IPR020472 -
Accr8g02329 784 PRINTS G protein beta WD-40 repeat signature 521 535 IPR020472 -
Accr8g02329 784 PRINTS G protein beta WD-40 repeat signature 771 784 IPR020472 -
Accr8g02329 784 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Accr8g02329 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 752 784 IPR001680 GO:0005515
Accr8g02329 784 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 784 IPR044716 GO:0003714
Accr8g02329 784 CDD WD40 498 784 - -
Accr8g02329 784 Gene3D - 636 784 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02329 Accr-Chr8 46844502 46852043 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02329 496 744 U-box Gene Family AT2G33340 27.170 3.50e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Accr8g02329 WD40 0.0078 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02329 - - gmx:100797756 1293.1