Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02328 ATGGCTCAGAGTAACTGGGAAGCAGATAAGATGCTTGATGTTTATATCTACGATTACTTGGTGAAGAAAAAATTGCATAATACTGCCAAGTCATTCATGACTGAAGGGAAGGTTGCGCCAGATCCAGTGGCAATTGATGCTCCTGGGGGGTTTCTTTTTGAGTGGTGGTCTGTATTCTGGGATATTTTTATTGCAAGGACAAACGAGAAACATTCTGAGTCTGCTGCAGCATATTTGGAGGCTCAACAGATTAAAGCAAAAGAACAGCAGCAGCTGCAAATGCAGCAGTTGCAACTTATGCGTCAGGCTCATCTTCAAAGGAGGGATCCTAATCATCCTCCTCTTGGCGGTACTGTAAATGCTATTTCTTCTGAAGGAATGCTTGGGCAACCTACTGCCAGTGCATTGGCCGCGAAAATGTATGAGGAACGGATGAAACACTCTAACCCAATGGAAACTGAGACATCCCAACCACTTATAGATGCTAGAATGGCCCTTTTGAAGTCAACAACAAGTCATCCTGGTCAGATTGTTCAAGGAAATACTGGAAGTGTGACTGCAGCTTTGCAGCACATGCAGGCTCGAAATCAGCAAACTCCGCAGGACATTAAAAGTGAAGTCAGCATGGGCACAATGCAAAGATCTTTGCCCATGGATCCTTCTTCAATTTATGGGCAGGGTGCAATGCAGTCAAAACCAGGAATAGTAAATCCAGGAGTTGGTAATCTCACACTGAAAGGATGGCCTTTAACTGGTATAGATCAAATTCGACCAGGTTTAGGAGCGCAAGTTCAAAAACCTCTCCTTCAAAGTGCAAATCAGTTCCAGCTTTTGCCCCAACAACAACAACAACAACTCTTGGCACAGGTTCAGGCACAAGGAAATATTACCAGTTCACCAATGTATGCAGATATGGATCCTCAACGGCTGAGGGGATTAGCTAGAGGTGGTTTGAATGCAAAAGATGGCCAACCTATTGCAAATGATGGATCAATTGGTTCTCCAATGCAATCCACGTCATCTAAGATCAACCTGCCACAGATGCAACAATCTACCTCTCAGCAACAGCAGGATCCCTTGCACCCACAACAACTGCAGCAGAATAACCGGAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAACAGCACTGGTACAGGAAACACGATTGGCCCTTCTAATTCCCAGCCATCAACCCCATCTACTCATACTCCTTGTGATGGAGTAGCCATGGCTGGTAACTTGCAGAATGTTGGTGGTGTATCCAAAACTTTGATGATGTATGGTGCTGATGGCACAGGTGGTCTTGCATCATCCACAAATCAACTGGATGACATGGAACGTTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAGTCATTTCTTTCACATGATGATGGTGATGGAAGAGATTTGTTTGGCACCTTGAAACGGAGTGCTTCTGAGCACACAACAGATGCTTCAAAAGGCTTTTCCTTTAGTGAAGTCGGCTCCATACGCAAGAGCAATGGCAAAGTTGTTTGCTGTCACTTCTCAACAGATGGGAAGTTATTGGCCAGTGCTGGACATGACAAGAAGGTTTTTCTGTGGAACATGGAGACTCTAAGTACAGAGAGCACTTCAGAGGAACACACTCTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTTGCAACTTCTTCATTTGATACAACTGTGCGGCTTTGGGATGCTTCAGATCCAAACTACTTTTGTTTACAGACATACACGGGTCATACCTCTCATGTGATGTCCCTTGATTTCCACCCAAAGAAAAATGACCTTTTCTGTTCTTGCGATGCCAACAGTGAAATTCGCTATTGGAATATTAGTCAATATTCCTGCACTCGCGTTTCCAAGGGAGGCTCTGCACAGGTGAGGTTTCAGCCAAGAATAGGACATCGTCTGGCTGCAGCAGCTGGTAATGTTGTATCCCTCTATGATGTTGAGACTGACAGGCTGGTGCAGTCATTGCAGGGGCACACCACAGATGTGAATTCTGTTTGTTGGGATCACAGTGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAGAGTGTGGTCATTGGCCTCTGGGGAGTGCATTCACGAGCTTAGTTCTAGCGGGAACATGTCCAATTCTTGTGTTTTTCACCCAAGTTACTCCACTCTCTTGGTTATCGGAGGTTACCAGTCATTGGAGCTATGGAACATGGCAGAGAATAAATGCATGACAATACCAGCTCATGAGTGTGTGATATCGTCTTTAGCAGTATCAACAGTATCAGGAATGGTTGCTTCTGCAAGTCATGACAAGTCCGTCAAGATTTGGAAGTGA 2349 0.4479 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAAAYLEAQQIKAKEQQQLQMQQLQLMRQAHLQRRDPNHPPLGGTVNAISSEGMLGQPTASALAAKMYEERMKHSNPMETETSQPLIDARMALLKSTTSHPGQIVQGNTGSVTAALQHMQARNQQTPQDIKSEVSMGTMQRSLPMDPSSIYGQGAMQSKPGIVNPGVGNLTLKGWPLTGIDQIRPGLGAQVQKPLLQSANQFQLLPQQQQQQLLAQVQAQGNITSSPMYADMDPQRLRGLARGGLNAKDGQPIANDGSIGSPMQSTSSKINLPQMQQSTSQQQQDPLHPQQLQQNNRKRKGPTSSGAANSTGTGNTIGPSNSQPSTPSTHTPCDGVAMAGNLQNVGGVSKTLMMYGADGTGGLASSTNQLDDMERFGDVGSLDDNVESFLSHDDGDGRDLFGTLKRSASEHTTDASKGFSFSEVGSIRKSNGKVVCCHFSTDGKLLASAGHDKKVFLWNMETLSTESTSEEHTLIITDVRFRPNSTQLATSSFDTTVRLWDASDPNYFCLQTYTGHTSHVMSLDFHPKKNDLFCSCDANSEIRYWNISQYSCTRVSKGGSAQVRFQPRIGHRLAAAAGNVVSLYDVETDRLVQSLQGHTTDVNSVCWDHSGDYLASVSQESVRVWSLASGECIHELSSSGNMSNSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECVISSLAVSTVSGMVASASHDKSVKIWK 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02328 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 750 782 IPR001680 GO:0005515
Accr8g02328 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 542 574 IPR001680 GO:0005515
Accr8g02328 782 MobiDBLite consensus disorder prediction 330 405 - -
Accr8g02328 782 Pfam LisH 10 36 IPR006594 GO:0005515
Accr8g02328 782 MobiDBLite consensus disorder prediction 315 410 - -
Accr8g02328 782 Gene3D - 634 782 IPR015943 GO:0005515
Accr8g02328 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 500 541 IPR001680 GO:0005515
Accr8g02328 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 542 574 - -
Accr8g02328 782 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 782 IPR044716 GO:0003714
Accr8g02328 782 Gene3D - 469 633 IPR015943 GO:0005515
Accr8g02328 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 586 628 IPR001680 GO:0005515
Accr8g02328 782 SMART WD40_4 702 741 IPR001680 GO:0005515
Accr8g02328 782 SMART WD40_4 535 574 IPR001680 GO:0005515
Accr8g02328 782 SMART WD40_4 661 699 IPR001680 GO:0005515
Accr8g02328 782 SMART WD40_4 743 782 IPR001680 GO:0005515
Accr8g02328 782 SMART WD40_4 579 619 IPR001680 GO:0005515
Accr8g02328 782 SMART WD40_4 493 532 IPR001680 GO:0005515
Accr8g02328 782 SMART Lish 8 40 IPR006594 GO:0005515
Accr8g02328 782 CDD WD40 496 782 - -
Accr8g02328 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 586 621 - -
Accr8g02328 782 Coils Coil 87 107 - -
Accr8g02328 782 PRINTS G protein beta WD-40 repeat signature 561 575 IPR020472 -
Accr8g02328 782 PRINTS G protein beta WD-40 repeat signature 769 782 IPR020472 -
Accr8g02328 782 PRINTS G protein beta WD-40 repeat signature 519 533 IPR020472 -
Accr8g02328 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 668 708 IPR001680 GO:0005515
Accr8g02328 782 ProSitePatterns Trp-Asp (WD) repeats signature. 519 533 IPR019775 -
Accr8g02328 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 500 535 - -
Accr8g02328 782 SUPERFAMILY WD40 repeat-like 494 782 IPR036322 GO:0005515
Accr8g02328 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 750 782 - -
Accr8g02328 782 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Accr8g02328 782 Pfam WD domain, G-beta repeat 545 574 IPR001680 GO:0005515
Accr8g02328 782 Pfam WD domain, G-beta repeat 748 782 IPR001680 GO:0005515
Accr8g02328 782 Pfam WD domain, G-beta repeat 505 532 IPR001680 GO:0005515
Accr8g02328 782 Pfam WD domain, G-beta repeat 664 699 IPR001680 GO:0005515
Accr8g02328 782 Pfam WD domain, G-beta repeat 582 619 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02328 Accr-Chr8 46844502 46852043 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02328 494 742 U-box Gene Family AT2G33340 27.170 3.64e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Accr8g02328 WD40 0.0078 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02328 - - gmx:100797756 1284.63