Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02327 ATGGCTCAGAGTAACTGGGAAGCAGATAAGATGCTTGATGTTTATATCTACGATTACTTGGTGAAGAAAAAATTGCATAATACTGCCAAGTCATTCATGACTGAAGGGAAGGTTGCGCCAGATCCAGTGGCAATTGATGCTCCTGGGGGGTTTCTTTTTGAGTGGTGGTCTGTATTCTGGGATATTTTTATTGCAAGGACAAACGAGAAACATTCTGAGTCTGCTGCAGCATATTTGGAGGCTCAACAGATTAAAGCAAAAGAACAGCAGCAGCTGCAAATGCAGCAGTTGCAACTTATGCGTCAGGCTCATCTTCAAAGGAGGGATCCTAATCATCCTCCTCTTGGCGGTACTGTAAATGCTATTTCTTCTGAAGGAATGCTTGGGCAACCTACTGCCAGTGCATTGGCCGCGAAAATGTATGAGGAACGGATGAAACACTCTAACCCAATGGAAACTGAGACATCCCAACCACTTATAGATGCTAGAATGGCCCTTTTGAAGTCAACAACAAGTCATCCTGGTCAGATTGTTCAAGGAAATACTGGAAGTGTGACTGCAGCTTTGCAGCACATGCAGGCTCGAAATCAGCAAACTCCGGACATTAAAAGTGAAGTCAGCATGGGCACAATGCAAAGATCTTTGCCCATGGATCCTTCTTCAATTTATGGGCAGGGTGCAATGCAGTCAAAACCAGGAATAGTAAATCCAGGAGTTGGTAATCTCACACTGAAAGGATGGCCTTTAACTGGTATAGATCAAATTCGACCAGGTTTAGGAGCGCAAGTTCAAAAACCTCTCCTTCAAAGTGCAAATCAGTTCCAGCTTTTGCCCCAACAACAACAACAACAACTCTTGGCACAGGTTCAGGCACAAGGAAATATTACCAGTTCACCAATGTATGCAGATATGGATCCTCAACGGCTGAGGGGATTAGCTAGAGGTGGTTTGAATGCAAAAGATGGCCAACCTATTGCAAATGATGGATCAATTGGTTCTCCAATGCAATCCACGTCATCTAAGATCAACCTGCCACAGATGCAACAATCTACCTCTCAGCAACAGCAGGATCCCTTGCACCCACAACAACTGCAGCAGAATAACCGGAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAACAGCACTGGTACAGGAAACACGATTGGCCCTTCTAATTCCCAGCCATCAACCCCATCTACTCATACTCCTTGTGATGGAGTAGCCATGGCTGGTAACTTGCAGAATGTTGGTGGTGTATCCAAAACTTTGATGATGTATGGTGCTGATGGCACAGGTGGTCTTGCATCATCCACAAATCAACTGTTGCAGGATGACATGGAACGTTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAGTCATTTCTTTCACATGATGATGGTGATGGAAGAGATTTGTTTGGCACCTTGAAACGGAGTGCTTCTGAGCACACAACAGATGCTTCAAAAGGCTTTTCCTTTAGTGAAGTCGGCTCCATACGCAAGAGCAATGGCAAAGTTGTTTGCTGTCACTTCTCAACAGATGGGAAGTTATTGGCCAGTGCTGGACATGACAAGAAGGTTTTTCTGTGGAACATGGAGACTCTAAGTACAGAGAGCACTTCAGAGGAACACACTCTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTTGCAACTTCTTCATTTGATACAACTGTGCGGCTTTGGGATGCTTCAGATCCAAACTACTTTTGTTTACAGACATACACGGGTCATACCTCTCATGTGATGTCCCTTGATTTCCACCCAAAGAAAAATGACCTTTTCTGTTCTTGCGATGCCAACAGTGAAATTCGCTATTGGAATATTAGTCAATATTCCTGCACTCGCGTTTCCAAGGGAGGCTCTGCACAGGTGAGGTTTCAGCCAAGAATAGGACATCGTCTGGCTGCAGCAGCTGGTAATGTTGTATCCCTCTATGATGTTGAGACTGACAGGCTGGTGCAGTCATTGCAGGGGCACACCACAGATGTGAATTCTGTTTGTTGGGATCACAGTGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAGAGTGTGGTCATTGGCCTCTGGGGAGTGCATTCACGAGCTTAGTTCTAGCGGGAACATGTCCAATTCTTGTGTTTTTCACCCAAGTTACTCCACTCTCTTGGTTATCGGAGGTTACCAGTCATTGGAGCTATGGAACATGGCAGAGAATAAATGCATGACAATACCAGCTCATGAGTGTGTGATATCGTCTTTAGCAGTATCAACAGTATCAGGAATGGTTGCTTCTGCAAGTCATGACAAGTCCGTCAAGATTTGGAAGTGA 2352 0.4477 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAAAYLEAQQIKAKEQQQLQMQQLQLMRQAHLQRRDPNHPPLGGTVNAISSEGMLGQPTASALAAKMYEERMKHSNPMETETSQPLIDARMALLKSTTSHPGQIVQGNTGSVTAALQHMQARNQQTPDIKSEVSMGTMQRSLPMDPSSIYGQGAMQSKPGIVNPGVGNLTLKGWPLTGIDQIRPGLGAQVQKPLLQSANQFQLLPQQQQQQLLAQVQAQGNITSSPMYADMDPQRLRGLARGGLNAKDGQPIANDGSIGSPMQSTSSKINLPQMQQSTSQQQQDPLHPQQLQQNNRKRKGPTSSGAANSTGTGNTIGPSNSQPSTPSTHTPCDGVAMAGNLQNVGGVSKTLMMYGADGTGGLASSTNQLLQDDMERFGDVGSLDDNVESFLSHDDGDGRDLFGTLKRSASEHTTDASKGFSFSEVGSIRKSNGKVVCCHFSTDGKLLASAGHDKKVFLWNMETLSTESTSEEHTLIITDVRFRPNSTQLATSSFDTTVRLWDASDPNYFCLQTYTGHTSHVMSLDFHPKKNDLFCSCDANSEIRYWNISQYSCTRVSKGGSAQVRFQPRIGHRLAAAAGNVVSLYDVETDRLVQSLQGHTTDVNSVCWDHSGDYLASVSQESVRVWSLASGECIHELSSSGNMSNSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECVISSLAVSTVSGMVASASHDKSVKIWK 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02327 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 751 783 - -
Accr8g02327 783 Pfam LisH 10 36 IPR006594 GO:0005515
Accr8g02327 783 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 783 IPR044716 GO:0003714
Accr8g02327 783 SUPERFAMILY WD40 repeat-like 495 783 IPR036322 GO:0005515
Accr8g02327 783 PRINTS G protein beta WD-40 repeat signature 770 783 IPR020472 -
Accr8g02327 783 PRINTS G protein beta WD-40 repeat signature 562 576 IPR020472 -
Accr8g02327 783 PRINTS G protein beta WD-40 repeat signature 520 534 IPR020472 -
Accr8g02327 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 501 536 - -
Accr8g02327 783 ProSitePatterns Trp-Asp (WD) repeats signature. 520 534 IPR019775 -
Accr8g02327 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 587 622 - -
Accr8g02327 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 543 575 - -
Accr8g02327 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 587 629 IPR001680 GO:0005515
Accr8g02327 783 Gene3D - 470 634 IPR015943 GO:0005515
Accr8g02327 783 SMART Lish 8 40 IPR006594 GO:0005515
Accr8g02327 783 Pfam WD domain, G-beta repeat 546 575 IPR001680 GO:0005515
Accr8g02327 783 Pfam WD domain, G-beta repeat 506 533 IPR001680 GO:0005515
Accr8g02327 783 Pfam WD domain, G-beta repeat 583 620 IPR001680 GO:0005515
Accr8g02327 783 Pfam WD domain, G-beta repeat 665 700 IPR001680 GO:0005515
Accr8g02327 783 Pfam WD domain, G-beta repeat 749 783 IPR001680 GO:0005515
Accr8g02327 783 Coils Coil 87 107 - -
Accr8g02327 783 CDD WD40 497 783 - -
Accr8g02327 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 751 783 IPR001680 GO:0005515
Accr8g02327 783 MobiDBLite consensus disorder prediction 329 404 - -
Accr8g02327 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 669 709 IPR001680 GO:0005515
Accr8g02327 783 SMART WD40_4 703 742 IPR001680 GO:0005515
Accr8g02327 783 SMART WD40_4 536 575 IPR001680 GO:0005515
Accr8g02327 783 SMART WD40_4 662 700 IPR001680 GO:0005515
Accr8g02327 783 SMART WD40_4 580 620 IPR001680 GO:0005515
Accr8g02327 783 SMART WD40_4 744 783 IPR001680 GO:0005515
Accr8g02327 783 SMART WD40_4 494 533 IPR001680 GO:0005515
Accr8g02327 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 543 575 IPR001680 GO:0005515
Accr8g02327 783 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Accr8g02327 783 MobiDBLite consensus disorder prediction 314 409 - -
Accr8g02327 783 Gene3D - 635 783 IPR015943 GO:0005515
Accr8g02327 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 501 542 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02327 Accr-Chr8 46844502 46852043 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02327 495 743 U-box Gene Family AT2G33340 27.170 3.71e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Accr8g02327 WD40 0.0078 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02327 - - gmx:100797756 1286.55