Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02326 ATGGCTCAGAGTAACTGGGAAGCAGATAAGATGCTTGATGTTTATATCTACGATTACTTGGTGAAGAAAAAATTGCATAATACTGCCAAGTCATTCATGACTGAAGGGAAGGTTGCGCCAGATCCAGTGGCAATTGATGCTCCTGGGGGGTTTCTTTTTGAGTGGTGGTCTGTATTCTGGGATATTTTTATTGCAAGGACAAACGAGAAACATTCTGAGTCTGCTGCAGCATATTTGGAGGCTCAACAGATTAAAGCAAAAGAACAGCAGCAGCTGCAAATGCAGCAGTTGCAACTTATGCGTCAGGCTCATCTTCAAAGGAGGGATCCTAATCATCCTCCTCTTGGCGGTACTGTAAATGCTATTTCTTCTGAAGGAATGCTTGGGCAACCTACTGCCAGTGCATTGGCCGCGAAAATGTATGAGGAACGGATGAAACACTCTAACCCAATGGAAACTGAGACATCCCAACCACTTATAGATGCTAGAATGGCCCTTTTGAAGTCAACAACAAGTCATCCTGGTCAGATTGTTCAAGGAAATACTGGAAGTGTGACTGCAGCTTTGCAGCACATGCAGGCTCGAAATCAGCAAACTCCGGACATTAAAAGTGAAGTCAGCATGGGCACAATGCAAAGATCTTTGCCCATGGATCCTTCTTCAATTTATGGGCAGGGTGCAATGCAGTCAAAACCAGGAATAGTAAATCCAGGAGTTGGTAATCTCACACTGAAAGGATGGCCTTTAACTGGTATAGATCAAATTCGACCAGGTTTAGGAGCGCAAGTTCAAAAACCTCTCCTTCAAAGTGCAAATCAGTTCCAGCTTTTGCCCCAACAACAACAACAACAACTCTTGGCACAGGTTCAGGCACAAGGAAATATTACCAGTTCACCAATGTATGCAGATATGGATCCTCAACGGCTGAGGGGATTAGCTAGAGGTGGTTTGAATGCAAAAGATGGCCAACCTATTGCAAATGATGGATCAATTGGTTCTCCAATGCAATCCACGTCATCTAAGATCAACCTGCCACAGATGCAACAATCTACCTCTCAGCAACAGCAGGATCCCTTGCACCCACAACAACTGCAGCAGAATAACCGGAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAACAGCACTGGTACAGGAAACACGATTGGCCCTTCTAATTCCCAGCCATCAACCCCATCTACTCATACTCCTTGTGATGGAGTAGCCATGGCTGGTAACTTGCAGAATGTTGGTGGTGTATCCAAAACTTTGATGATGTATGGTGCTGATGGCACAGGTGGTCTTGCATCATCCACAAATCAACTGGATGACATGGAACGTTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAGTCATTTCTTTCACATGATGATGGTGATGGAAGAGATTTGTTTGGCACCTTGAAACGGAGTGCTTCTGAGCACACAACAGATGCTTCAAAAGGCTTTTCCTTTAGTGAAGTCGGCTCCATACGCAAGAGCAATGGCAAAGTTGTTTGCTGTCACTTCTCAACAGATGGGAAGTTATTGGCCAGTGCTGGACATGACAAGAAGGTTTTTCTGTGGAACATGGAGACTCTAAGTACAGAGAGCACTTCAGAGGAACACACTCTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTTGCAACTTCTTCATTTGATACAACTGTGCGGCTTTGGGATGCTTCAGATCCAAACTACTTTTGTTTACAGACATACACGGGTCATACCTCTCATGTGATGTCCCTTGATTTCCACCCAAAGAAAAATGACCTTTTCTGTTCTTGCGATGCCAACAGTGAAATTCGCTATTGGAATATTAGTCAATATTCCTGCACTCGCGTTTCCAAGGGAGGCTCTGCACAGGTGAGGTTTCAGCCAAGAATAGGACATCGTCTGGCTGCAGCAGCTGGTAATGTTGTATCCCTCTATGATGTTGAGACTGACAGGCTGGTGCAGTCATTGCAGGGGCACACCACAGATGTGAATTCTGTTTGTTGGGATCACAGTGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAGAGTGTGGTCATTGGCCTCTGGGGAGTGCATTCACGAGCTTAGTTCTAGCGGGAACATGTCCAATTCTTGTGTTTTTCACCCAAGTTACTCCACTCTCTTGGTTATCGGAGGTTACCAGTCATTGGAGCTATGGAACATGGCAGAGAATAAATGCATGACAATACCAGCTCATGAGTGTGTGATATCGTCTTTAGCAGTATCAACAGTATCAGGAATGGTTGCTTCTGCAAGTCATGACAAGTCCGTCAAGATTTGGAAGTGA 2346 0.4476 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAAAYLEAQQIKAKEQQQLQMQQLQLMRQAHLQRRDPNHPPLGGTVNAISSEGMLGQPTASALAAKMYEERMKHSNPMETETSQPLIDARMALLKSTTSHPGQIVQGNTGSVTAALQHMQARNQQTPDIKSEVSMGTMQRSLPMDPSSIYGQGAMQSKPGIVNPGVGNLTLKGWPLTGIDQIRPGLGAQVQKPLLQSANQFQLLPQQQQQQLLAQVQAQGNITSSPMYADMDPQRLRGLARGGLNAKDGQPIANDGSIGSPMQSTSSKINLPQMQQSTSQQQQDPLHPQQLQQNNRKRKGPTSSGAANSTGTGNTIGPSNSQPSTPSTHTPCDGVAMAGNLQNVGGVSKTLMMYGADGTGGLASSTNQLDDMERFGDVGSLDDNVESFLSHDDGDGRDLFGTLKRSASEHTTDASKGFSFSEVGSIRKSNGKVVCCHFSTDGKLLASAGHDKKVFLWNMETLSTESTSEEHTLIITDVRFRPNSTQLATSSFDTTVRLWDASDPNYFCLQTYTGHTSHVMSLDFHPKKNDLFCSCDANSEIRYWNISQYSCTRVSKGGSAQVRFQPRIGHRLAAAAGNVVSLYDVETDRLVQSLQGHTTDVNSVCWDHSGDYLASVSQESVRVWSLASGECIHELSSSGNMSNSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECVISSLAVSTVSGMVASASHDKSVKIWK 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02326 781 Pfam LisH 10 36 IPR006594 GO:0005515
Accr8g02326 781 SUPERFAMILY WD40 repeat-like 493 781 IPR036322 GO:0005515
Accr8g02326 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 585 620 - -
Accr8g02326 781 CDD WD40 495 781 - -
Accr8g02326 781 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 781 IPR044716 GO:0003714
Accr8g02326 781 PRINTS G protein beta WD-40 repeat signature 518 532 IPR020472 -
Accr8g02326 781 PRINTS G protein beta WD-40 repeat signature 768 781 IPR020472 -
Accr8g02326 781 PRINTS G protein beta WD-40 repeat signature 560 574 IPR020472 -
Accr8g02326 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 499 540 IPR001680 GO:0005515
Accr8g02326 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 749 781 IPR001680 GO:0005515
Accr8g02326 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 667 707 IPR001680 GO:0005515
Accr8g02326 781 SMART Lish 8 40 IPR006594 GO:0005515
Accr8g02326 781 Coils Coil 87 107 - -
Accr8g02326 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 585 627 IPR001680 GO:0005515
Accr8g02326 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 499 534 - -
Accr8g02326 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 749 781 - -
Accr8g02326 781 Pfam WD domain, G-beta repeat 747 781 IPR001680 GO:0005515
Accr8g02326 781 Pfam WD domain, G-beta repeat 581 618 IPR001680 GO:0005515
Accr8g02326 781 Pfam WD domain, G-beta repeat 504 531 IPR001680 GO:0005515
Accr8g02326 781 Pfam WD domain, G-beta repeat 663 698 IPR001680 GO:0005515
Accr8g02326 781 Pfam WD domain, G-beta repeat 544 573 IPR001680 GO:0005515
Accr8g02326 781 Gene3D - 633 781 IPR015943 GO:0005515
Accr8g02326 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 541 573 IPR001680 GO:0005515
Accr8g02326 781 Gene3D - 468 632 IPR015943 GO:0005515
Accr8g02326 781 MobiDBLite consensus disorder prediction 329 404 - -
Accr8g02326 781 SMART WD40_4 534 573 IPR001680 GO:0005515
Accr8g02326 781 SMART WD40_4 660 698 IPR001680 GO:0005515
Accr8g02326 781 SMART WD40_4 701 740 IPR001680 GO:0005515
Accr8g02326 781 SMART WD40_4 742 781 IPR001680 GO:0005515
Accr8g02326 781 SMART WD40_4 578 618 IPR001680 GO:0005515
Accr8g02326 781 SMART WD40_4 492 531 IPR001680 GO:0005515
Accr8g02326 781 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Accr8g02326 781 MobiDBLite consensus disorder prediction 314 409 - -
Accr8g02326 781 ProSitePatterns Trp-Asp (WD) repeats signature. 518 532 IPR019775 -
Accr8g02326 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 541 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02326 Accr-Chr8 46844502 46852043 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02326 493 741 U-box Gene Family AT2G33340 27.170 3.67e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Accr8g02326 WD40 0.0078 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02326 - - qsa:O6P43_023990 1284.24