Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02312 ATGCAATCAACTCAAGCAGCTGCGAATGAAAGTTCTGATAATTCACAAAAGACTGATCTTCAGTTAAACAAAGAAGTTTCAGATGATGGACCAAGTGGGAGGCGGCCAGATATTTCACTTCAAATCCCACCTAGACATTTAGGGTTCGGAAGCACACGGGGTGGAAGGTCTCTGGATCATTCTCAAAGCTTCTCTAAAGGGATTCCATCACCACGAGGCTTTTTGCGGGCTTTGAGCCTCAAGAGGAAGGGAAATACAGGAGATGTTGAAAGAAGCAGCCTCCTCAATTCAGATCCCAAGGCAGCTCCAGACAGTCCAAATATGGCCAACTTTTCAACTGCAATTGCATGGCAAAGATGTACTTCTCTTCCTGTTACGCCTGCTACTAATCTGTCTCCTTCAGTTTCTACACCTGCTTCTGCAAGGACATACAATGAACAGCCTAAACGCCATAAAGGTGCTGTTTCCGCGGGTACCAAGGTTTCAAGGTCCCTGTCTGTGCCTGGGCGGAATATGGTTATTGTAAGATCTTTGTCTTTTGCTGCCCGGAGTGAGCATGCACAGCAAGATCAGAATGATGATCAAATAACCCCTGTGCCAGTAGAAGATGATGATCAAGAAATTCCTGAAGAGGAAGCAGTTTGCAGAATCTGTTATGATGTCTGTGATGAAAGGAACACCCTCAAATTGGAGTGCAGTTGTAAAGGCGACTTGAGACTTGTTCATGAGGAATGTGCAATTAAATGGTTTAGCACAAAAGGAAATAAGAAATGTGATGTTTGTGGCCAAGAGGTCCAGAATTTACCTGTAACATTGCTTCGTTTGCCCAGCTCTGCTCAGACAGGAAGGGGGCACATGCAGGGTCAGCAGAACATTCATCCTGAGACATTAAGTGCTTGGCAAGACTTCGTGGTGCTTACCCTAATAAGCACAATATGCTATTTTTTCTTCCTTGAGCAGCTACTGCTTCCTGACATGAAGACTCAAGCAATCATTATAGCGGCACCATTTGCCTTTACCTTGGGTCTCCTGGCAACTCTTTTTGCAGTCATCCTTGCAATAAAGGAGTATATATGGACATATGCTGCTCTCGAGTTTGCTCTTGTGGCTATAACAGTACATGTGTTCTATAGTATGTTGCATTTGAAGGCCATTTATGCAATAATGCTTTCATCAGTTTCGGGTTTTGGTATGGCTATGAGCATCAACTATGCATATATCCAGTATGTTTCTTGGCGTCTTCAAGTCGCCCAGGTCTCCAACCCAGTATGA 1272 0.4418 MQSTQAAANESSDNSQKTDLQLNKEVSDDGPSGRRPDISLQIPPRHLGFGSTRGGRSLDHSQSFSKGIPSPRGFLRALSLKRKGNTGDVERSSLLNSDPKAAPDSPNMANFSTAIAWQRCTSLPVTPATNLSPSVSTPASARTYNEQPKRHKGAVSAGTKVSRSLSVPGRNMVIVRSLSFAARSEHAQQDQNDDQITPVPVEDDDQEIPEEEAVCRICYDVCDERNTLKLECSCKGDLRLVHEECAIKWFSTKGNKKCDVCGQEVQNLPVTLLRLPSSAQTGRGHMQGQQNIHPETLSAWQDFVVLTLISTICYFFFLEQLLLPDMKTQAIIIAAPFAFTLGLLATLFAVILAIKEYIWTYAALEFALVAITVHVFYSMLHLKAIYAIMLSSVSGFGMAMSINYAYIQYVSWRLQVAQVSNPV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02312 423 PANTHER OS02G0165000 PROTEIN 45 420 - -
Accr8g02312 423 SUPERFAMILY RING/U-box 211 265 - -
Accr8g02312 423 SMART ringv_2 214 262 IPR011016 GO:0008270
Accr8g02312 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 269 IPR013083 -
Accr8g02312 423 MobiDBLite consensus disorder prediction 1 21 - -
Accr8g02312 423 ProSiteProfiles Zinc finger RING-CH-type profile. 207 268 IPR011016 GO:0008270
Accr8g02312 423 MobiDBLite consensus disorder prediction 184 205 - -
Accr8g02312 423 MobiDBLite consensus disorder prediction 85 105 - -
Accr8g02312 423 CDD RING_CH-C4HC3_MARCH 215 262 - -
Accr8g02312 423 MobiDBLite consensus disorder prediction 128 144 - -
Accr8g02312 423 Pfam RING-variant domain 215 261 IPR011016 GO:0008270
Accr8g02312 423 MobiDBLite consensus disorder prediction 128 162 - -
Accr8g02312 423 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02312 Accr-Chr8 46692746 46697009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02312 228 323 C3H Transcription Factor Family AT5G59000 33.333 8.83e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02312 - - gmx:100777100 622.083