Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02307 ATGGCGAGATACCGAAGCCGGAGCAGAAGTTACAGCCCTCGCCGGCGAAGCAGAACCCCACCGCGTGGACGCAAGCGTTACGATGATGAACCTCGTGATCGATACCGTGAAAGCAGGTCCTACCGAGACCGCCGCTCTCCTGCTCCTTCGGGCTTGCTTGTCCGTAATCTTCCGCTCGATGCTAAGCCTGAAGATCTTAGGGGCCCCTTTGAGCGCTATGGCCCTGTGAAAGATGTATATCTTCCCAAGAATTACTACACTGGCGAGCCCCGGGGCTTTGGCTTTGTAAAATTCCGGTATGCTGAAGATGCTGCTGAAGCAAAGCAACAACTTAATCATACTGTTATTGGCGGACGTGAAATAAGAATAGTGTATGCTGAGGAAAATAGGAAAACTCCTCAAGAAATGCGTGTGAATACTCGCGTAAGTGGTCGGCATGGAGGAAATGGTAGAAGAAGAACTCCCACAAGATCTCCAAGGCGCCGATATCGTTCCTACTCAAGGTCTCTATCACCAGCTGTTGATCACTCAAGGAAATTCCCATATGTTTGA 552 0.5018 MARYRSRSRSYSPRRRSRTPPRGRKRYDDEPRDRYRESRSYRDRRSPAPSGLLVRNLPLDAKPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQQLNHTVIGGREIRIVYAEENRKTPQEMRVNTRVSGRHGGNGRRRTPTRSPRRRYRSYSRSLSPAVDHSRKFPYV 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02307 183 SMART rrm2_1 51 124 IPR003954 GO:0003676
Accr8g02307 183 MobiDBLite consensus disorder prediction 22 44 - -
Accr8g02307 183 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 122 IPR000504 GO:0003723
Accr8g02307 183 ProSitePatterns Protamine P1 signature. 2 12 IPR000221 GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092
Accr8g02307 183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Accr8g02307 183 MobiDBLite consensus disorder prediction 131 183 - -
Accr8g02307 183 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 47 168 - -
Accr8g02307 183 MobiDBLite consensus disorder prediction 1 21 - -
Accr8g02307 183 Gene3D - 2 140 IPR012677 -
Accr8g02307 183 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 142 - -
Accr8g02307 183 SUPERFAMILY RNA-binding domain, RBD 47 154 IPR035979 GO:0003676
Accr8g02307 183 MobiDBLite consensus disorder prediction 1 55 - -
Accr8g02307 183 MobiDBLite consensus disorder prediction 146 164 - -
Accr8g02307 183 SMART rrm1_1 51 124 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02307 Accr-Chr8 46657661 46663309 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02307 42 137 Eukaryotic Initiation Factors Gene Family AT1G22760 28.571 3.63e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02307 K12900 - qsa:O6P43_003493 224.942