Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02304 ATGGAAACTCAAGCTCCTTCTACTCCGACAACAGCCCTGTCACCCTCATTGACGCCGCCGCCGCCGCCGCAGTCACCGCCACCAGCGGTCCTCGATCAGCCACCGGGGGTTTCTGAAATGGAGACGCAACACGGTCTGTCGGAAGACGCTTCATCCGTTTGGGACCTGGATTGCCTATTAGATTTCAGCTTGGACGAGAATTTAGCTCTATCGTTAGACGATTATCATCCTAATTCAGAGGTTCCTCAAAGTCCGGTGCTTCCTTCTCAAGAGATTCCTAGTTCTGAGAAGGTTCGCAAGCGAGACCCCAGGTTGACTTGTTCCAATTTCCTGGCTGGTCGGGTCCCATGTGCTTGCCCGGAGCTCGACGCTAACCTCGAGGAAGAAGCTTTTCGTGGCAAGAAGCGCGCTCGCACCGTGCGGGCATCCGCTGGGATTGCACGGTGCCAGGTGCCTGGGTGTGAGGCAGATATTAGTGAGCTCAAAGGCTATCATCGGAGGCACAGGGTTTGTTTGCGTTGCGCTAATGCTAGTACGGTTATGCTTGATGGGGAGGCCAAGAGATACTGCCAACAGTGTGGAAAGTTTCACATATTATCAGATTTTGATGAAGGTAAACGAAGCTGCAGAAGAAAATTAGAGCGCCACAACAATCGAAGGCGTAGAAAGCCTACAGAAACCAGAGCTGCAGAAGATCATGAAGTTCAACCTGTCAAACAGATTGAGGATGATGTGGGAAAAGATAGTTCACATATAAGCAGTGAGATAAACGACCTAGAAATTTCCTTGGAGCTCGAAGATGGACAACTTGCTGCTCCATGTTCGGCTCCTGATACCTTGAACATTAAAAATGATAGTTTTGTGTCCTCTGTTGCTTGCGGTGAAACACAAGTGAATGGTGGAAAAGAGAATTCTAACATTTCTTATTCACCCTCATATTGTGACAAGAGTGCTTACTCATCAATGTGCCCAACAGGTCGAGTATCTTTTAAGCTTTATGATTGGAATCCTGCGGAGTTTCCTAGACGGCTACGGCATCAAATATTCCAATGGTTGGCCAGCATGCCTGTTGAGCTGGAGGGTTATATCCGCCCTGGGTGTACAATTTTGACAGTTTTTGTAACCATGCCTAAATTTATGTGGACAAGTTTACTTGAAGAGCCTCTGTATTACGTGCAAGACATAGTCGCTCCAGGAAAGATGCTATATGGAAGAGGCACCATCTTTGTTCATCTAAATGACATGGTCTTCTGTGTTTTCAAAGATGAAACTTCTGTGATGGAAGTTCAGATAAAGGTTAATGCACCAAGGCTTCACTATGTTCATCCCACATACTTTGAAGCTGGAAAACCTATGGAATTTGTTGCTTGTGGTAGTAACTTGCTGCAGCCTAAGTTTCGGCTTCTCATATCTTTTTCAGGAAAGTATTTAAAGTATAAAAATTGTGTTGTATCTCCTCATAACTGGGCAGGAGATAGCATTTCTTGTGCTTTTGATGGTCAGTTGTATAAGATTTGTGTCCCTCAGATGGAGCCAAACATATTTGGACCTGCATTTATTGAGGTGGAGAATGAGTCTGGTTTATCGAACTTCATTCCTGTACTCATTGGGGACGCTGAAATCTGCTCTGAATTGGGGACAATGCAGCAAAAACTAGATACATCTCTTCTTTCAAAACAAATTGATCCTGCATCTGGCAGTTCTATTTGCAGCTTCTGTGAAGCTTTTGCACTGAGACATACAGCATACTCAGACTTACTGTTAGATATAGCATGGCTGCTTAAAGATCCCACTTCAGAAGATTTTCATAGAGCCATGACAACTTCACAAATTCAAAGATTTTGTTATTTGATAGACTTTCTGATGTGCAATGAATTAATTGTCATTTTGGGGAAAATATTGCGGAATTTGGATATTTTGACAGAAAGCATGGAACTGAACAATGTGATTAACAGAATGAGTGAGGCTGACATGACATTACTACTGAAACACACGTGTCAAGCTAGAGAGTTTCTTTGTCAGAAACATCAGAAGGGTGAAGATTTAATCTTGCACTCTGTTTTATCTGAAATGGAAGGGCATAAAGTTGCTCCAAGCTGCTATCAAGATAAGATACAATCAGTTGTCACTATCGGCAATCAGGGTGCCGAGTCAAGGGTAGATGCTAAATTGGGAGTGAGAAGTCCAACTTGGGTTGACAAAAGGGAAAGGATACCCCTTTTGGGGAATGGTGTTATAACGAAGATGGAAGAGTTGCCTCGTCGATATCGATATCTTGCGAGGCGGCCGGCCATTCTCATGATTGCTGCACTCACGGTGTGTTTTGGGGTTTGCGCAGCCCTCCTTCATCCTGGGAGGGTTGGTGAGTTTGCAGTATCCATTAGAAGGTGCTTGTTCAACAATTCATAG 2409 0.4438 METQAPSTPTTALSPSLTPPPPPQSPPPAVLDQPPGVSEMETQHGLSEDASSVWDLDCLLDFSLDENLALSLDDYHPNSEVPQSPVLPSQEIPSSEKVRKRDPRLTCSNFLAGRVPCACPELDANLEEEAFRGKKRARTVRASAGIARCQVPGCEADISELKGYHRRHRVCLRCANASTVMLDGEAKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKPTETRAAEDHEVQPVKQIEDDVGKDSSHISSEINDLEISLELEDGQLAAPCSAPDTLNIKNDSFVSSVACGETQVNGGKENSNISYSPSYCDKSAYSSMCPTGRVSFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTVFVTMPKFMWTSLLEEPLYYVQDIVAPGKMLYGRGTIFVHLNDMVFCVFKDETSVMEVQIKVNAPRLHYVHPTYFEAGKPMEFVACGSNLLQPKFRLLISFSGKYLKYKNCVVSPHNWAGDSISCAFDGQLYKICVPQMEPNIFGPAFIEVENESGLSNFIPVLIGDAEICSELGTMQQKLDTSLLSKQIDPASGSSICSFCEAFALRHTAYSDLLLDIAWLLKDPTSEDFHRAMTTSQIQRFCYLIDFLMCNELIVILGKILRNLDILTESMELNNVINRMSEADMTLLLKHTCQAREFLCQKHQKGEDLILHSVLSEMEGHKVAPSCYQDKIQSVVTIGNQGAESRVDAKLGVRSPTWVDKRERIPLLGNGVITKMEELPRRYRYLARRPAILMIAALTVCFGVCAALLHPGRVGEFAVSIRRCLFNNS 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02304 802 Gene3D - 145 210 IPR036893 GO:0003677|GO:0005634
Accr8g02304 802 MobiDBLite consensus disorder prediction 13 33 - -
Accr8g02304 802 ProSiteProfiles Zinc finger SBP-type profile. 146 223 IPR004333 GO:0003677
Accr8g02304 802 SUPERFAMILY SBT domain 147 227 IPR036893 GO:0003677|GO:0005634
Accr8g02304 802 Pfam SBP domain 149 223 IPR004333 GO:0003677
Accr8g02304 802 MobiDBLite consensus disorder prediction 75 99 - -
Accr8g02304 802 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 62 623 IPR044817 GO:0003677
Accr8g02304 802 MobiDBLite consensus disorder prediction 1 46 - -
Accr8g02304 802 MobiDBLite consensus disorder prediction 215 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02304 Accr-Chr8 46642281 46648150 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02304 27 795 SBP-box Gene Family AT5G18830 45.579 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Accr8g02304 SBP 5.3e-28 No_clan