Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02244 ATGGGAAATCTATGGAGTAGCAGAAGAAGAAACAATTACTTTCACTATCCACCTCCGCCTCCCCCTCATCTGCCACCTCCTTATTACTATTCCGCCGATTCCCATCTTCCTCCTCCGCCCCCGCCCCCGCCACCTCAGCCGCCAGGCTATTATCTGACCAATTCTTACGTCAGCACGACTCCGCCGCCACCGCCTCCGCCTCAGCCTCAGCCTCAGCCTTACGCCCATTCATTCAGTCACTCAAATGGCCACAACTATTGCCCCAACTATGGCAATTCTATGACGGGTCGCTTTCAGTACCAGCCTTATTATGTAAATCAGGGTACTGGTAATTGGCCTCCGATTCGTCCTCCTCTTGCTCTGGCCAATCCCCCACCGCCCTATGTCGATCATCAAACCGCTAAGACGGTAAAAAATGACGTCAATGTGCATAAAGATACTTTGCGGCTTGAGTTGGATGAGCACAATCCTGACCAGCACTTGGTTTCATTTGTTTTCGATGCCTTGTATGATGGGAGCATTTCTATAATCTACTTTGCCAAGGAAGTGGAAACATGCAAGTTCATTCCACTTTTTCCTGAGATTGAACCAATCAAAATCCCTTTCCAGAAAGGAGCCGGACAAAAGTTTTTTCAGCCTTCAGGAACTGGCATTGACTTAGGCTTCTTTGAGTTGGATGATCTCTCAAAACCCTCACAAGAAGAAGATGTCTTCCCCCTTGTGGTATGTGCTGAAACATATTCAAGAACTCCTCCAGCGGATGAAAACTTTGGTGATTCAGTGGCTGATGTGTCACCTAACAGGCAGATAACTCAAGCTGTTATTGAGAAAAGCAATGGTAGTGGTTCTTTCCAGGTAAAAGTAATTAGGCAGATTTTGTGGATTGATGGAGATCGTTATGAATTAAGAGAGATATATGGAATTGGAGGCTCAGCAGCAGCAGACTTTAATGACAATGATCCTGAGAAGGAGGAGTGTGTGATATGCATGACTGAACCAAAGGACACTGCTGTCTTGCCGTGTCGTCATATGTGTATGTGCAGTGAGTGCGCCAAAGCTTTGAGGCTTCAATCAAATAAGTGCCCCATATGCCGTCAATCCATTGAGGAACTTATAGAGATCAAGATAAATAATGGTCACCAATGA 1146 0.4607 MGNLWSSRRRNNYFHYPPPPPPHLPPPYYYSADSHLPPPPPPPPPQPPGYYLTNSYVSTTPPPPPPPQPQPQPYAHSFSHSNGHNYCPNYGNSMTGRFQYQPYYVNQGTGNWPPIRPPLALANPPPPYVDHQTAKTVKNDVNVHKDTLRLELDEHNPDQHLVSFVFDALYDGSISIIYFAKEVETCKFIPLFPEIEPIKIPFQKGAGQKFFQPSGTGIDLGFFELDDLSKPSQEEDVFPLVVCAETYSRTPPADENFGDSVADVSPNRQITQAVIEKSNGSGSFQVKVIRQILWIDGDRYELREIYGIGGSAAADFNDNDPEKEECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQSIEELIEIKINNGHQ 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02244 381 FunFam probable E3 ubiquitin-protein ligase LOG2 309 375 - -
Accr8g02244 381 MobiDBLite consensus disorder prediction 27 80 - -
Accr8g02244 381 ProSiteProfiles Zinc finger RING-type profile. 326 365 IPR001841 -
Accr8g02244 381 MobiDBLite consensus disorder prediction 1 20 - -
Accr8g02244 381 SUPERFAMILY RING/U-box 320 371 - -
Accr8g02244 381 CDD mRING-HC-C3HC5_MGRN1-like 325 365 IPR045195 -
Accr8g02244 381 SMART ring_2 326 364 IPR001841 -
Accr8g02244 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 379 IPR013083 -
Accr8g02244 381 MobiDBLite consensus disorder prediction 27 50 - -
Accr8g02244 381 MobiDBLite consensus disorder prediction 58 73 - -
Accr8g02244 381 PANTHER MAHOGUNIN 1 375 IPR045194 GO:0061630
Accr8g02244 381 Pfam Zinc finger, C3HC4 type (RING finger) 323 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02244 Accr-Chr8 46092488 46095999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02244 96 378 C3H Transcription Factor Family AT3G06140 57.483 1.74e-104 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02244 - - qsa:O6P43_021626 498.819