Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02227 ATGGATAGTTTCACCTCCTCATCATCTCTTCCCCCTCCTCCACCTCTGTCCGACATTCTTCCCACATCGGCTTCGTCCTCTTCTGCTGCTTTCGACGACGGTTCCGAGGACTCCTGCAGTATTTGTTTAGAGCCCTTCAGTACCGATGACCCTGCTACTATAACAAATTGCAAACATGAATATCATCTGCACTGTATTCTTGAATGGTCTCAGAGAAGCAAAGAGTGTCCAATCTGTTGGCAGATGCTCGTCTTGAAAGACCCAGCCAACCAAGAACTTCTAGCTGCAGTGGAAGCTGAAAAACGCGCGAGGTCGAGAAGCTCATACTCCTCTGCATTCCCATATCCTCGTATCCCCATTGAACGGCATAGTGCAGAACATGATGATTCTTGTTCAGATGACTCTGATTTTGATGAACAAATTATGCAGCACCTAGTTGCTGCTGCAAGTAGAGCACATTATTTTCGTAGACGGGAAATGCAAAGAGCATCTGGAGTGGGTCCATCTCGGATTCCTGTACCTGACTCTTCATTGCATGTCTCCGGGCAGCAACCAGTGCATGCAACTTCACCTTCTGGAGGTAGTTCACCTAATTCTGGTCCTGCTTCAGACGTTCAACCCCCACCATCTGCCCCTTCCTCTATTGAAGCAATTACAAGAAATGCCACTCCTGAAACTGATGACCCTTTCAAAGCCAGGGTTCTTCATAGCCAGCCACCTTCTGAGAGTGCGAGAAGACTGAACTCTTCTGAGATGTTTACCTTCCCTGAGTCCATCAAGACCAAATTTTCCGCTGCTTCAGCTAGATATAAAGAATCTATTTCAAAAAGTACACGTGGCCTTAAAGAGAAATTACTTGCTCGTAATGCTTCAGTAAAAGAGCTGAGTAAAGGTGTTCAACGTGAGATGAATGCTGGCATTGCTGGTGTTGCACGGATGATTGAACGCCTTGATCTTGCCTCAAAACGGGCTACTGCTTCTCCTCCCATGCCTAGCTCTACCGTGGGAACTTCTGGCTTCCCCTTTAAAGGAAAGACTGTCCAAGAAAATGGTGGTGGACAGTTTCTTCTCTCTGCTGTTAAGGAAGAGAGTGGACTTGTCATTCATGATGTTAGACCAAGTCCACCTGCTTCGGTTTCCAGTGCGGCTGTTAGTCCAGTAGAATATCCTCAACCACACGTTGAGAGTGGTTGTGATGAGGTAAAGACTTAG 1212 0.4678 MDSFTSSSSLPPPPPLSDILPTSASSSSAAFDDGSEDSCSICLEPFSTDDPATITNCKHEYHLHCILEWSQRSKECPICWQMLVLKDPANQELLAAVEAEKRARSRSSYSSAFPYPRIPIERHSAEHDDSCSDDSDFDEQIMQHLVAAASRAHYFRRREMQRASGVGPSRIPVPDSSLHVSGQQPVHATSPSGGSSPNSGPASDVQPPPSAPSSIEAITRNATPETDDPFKARVLHSQPPSESARRLNSSEMFTFPESIKTKFSAASARYKESISKSTRGLKEKLLARNASVKELSKGVQREMNAGIAGVARMIERLDLASKRATASPPMPSSTVGTSGFPFKGKTVQENGGGQFLLSAVKEESGLVIHDVRPSPPASVSSAAVSPVEYPQPHVESGCDEVKT 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02227 403 MobiDBLite consensus disorder prediction 176 201 - -
Accr8g02227 403 Pfam Ring finger domain 37 79 IPR001841 -
Accr8g02227 403 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 9 88 - -
Accr8g02227 403 MobiDBLite consensus disorder prediction 161 248 - -
Accr8g02227 403 SUPERFAMILY RING/U-box 32 86 - -
Accr8g02227 403 MobiDBLite consensus disorder prediction 20 34 - -
Accr8g02227 403 FunFam E3 ubiquitin-protein ligase RHF1A 24 91 - -
Accr8g02227 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 95 IPR013083 -
Accr8g02227 403 ProSiteProfiles Zinc finger RING-type profile. 39 79 IPR001841 -
Accr8g02227 403 MobiDBLite consensus disorder prediction 368 403 - -
Accr8g02227 403 SMART ring_2 39 79 IPR001841 -
Accr8g02227 403 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02227 Accr-Chr8 45924865 45927913 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02227 33 90 C3H Transcription Factor Family AT4G00335 46.552 8.77e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02227 K19043 - qsa:O6P43_021605 409.838