Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02226 ATGCGAAGACCTTGTTCCCCGGCATATATTAGACAGGATGGAAGAAATTGGATATGTTATGCCTACAGATGTCCAGAGGCAGGCATTGCCTTCTCTTTTATCCGGTCGCGATTGCATACTTCATGCTCAGGTTCTGGGAAGACGCTTGCATACCTGCTTCTGATATATTCCGTCATTAACACTGCAAAATCTTCTGTGCAAGCTCTTGTTCTGGTGCCCACTCGTGAACTTGGCATGCAAGTTGCTAAAGTTGCTAGGATGTTGGCAGCAAGTCCGACAGGGGTTGAGGAGGAGCACAAGTCATGTACCGTCATGGCTCTTTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGCTAAAGGCAGAGCCTCCAATGATAGTGGTAGCAACAGTGGGGAGTTTATGCCACATAATTGAAAGACAATTTTTAAAGCTTGAATCTGTGCGGGTGTTAGTAGTTGATGAGGTTGACTTTATTTTCAATTCTTCAAAGCAAGTCAGTTCCCTTCGAAAGCTTTTAACTTTGTATTCGTCATGCAATAACCGACAGACAGTTTTTGCCAGTGCATCTATACCACAACACAGACGATTTCTTCATGATTGTGTGCAGCAGAAATGGACTAAGAGTGACGTGGTCCATGTTCATGTCAGCCCAGTTGAGCCCATGCCACCACGCCTGCATCATAGATTTGTAGTATGTCATAGGAACAAGAAGCAACAACCCCTGTTATCTTTGATACAAACGGATGCACCTGAGTCGGGCATTATATTTGTCAGTGAGCAGTCTGAGAGGTCAAAACGGGCAGGAAATGCTCCATCGACGTCCCTTCTAATTGACTTTCTGAAGACTTCATATCTAGGCCCTTTAGATGTCCTCCTCCTTGAGGAAGATATGAATTTCAATTCACGAGCAGTTTCACTGTTGGAGGTAAGGAAAGGTGACGGCTATCTTCTTGTAGCAACAGATGTAGCTTCAAGAGGAGTTGACCTTCCACAAATGTCTCACATTTACAACTTTGATCTGCCTAAGACTGCCGTAGATTATCTTCATCGGGCAGGTAGGACTTGTAGGAAACCTTTTTCTGACATGAAGTGTACTGTTACCACTCTCATTGTTCCAGAGGAGCGGTTTGTTCTCCAGAAGTATGAAAATGAGTTAATGTTCGGTTGTGAAGAGCTTACTTTGTAA 1191 0.4391 MRRPCSPAYIRQDGRNWICYAYRCPEAGIAFSFIRSRLHTSCSGSGKTLAYLLLIYSVINTAKSSVQALVLVPTRELGMQVAKVARMLAASPTGVEEEHKSCTVMALLDGGTLRRHKSWLKAEPPMIVVATVGSLCHIIERQFLKLESVRVLVVDEVDFIFNSSKQVSSLRKLLTLYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVVHVHVSPVEPMPPRLHHRFVVCHRNKKQQPLLSLIQTDAPESGIIFVSEQSERSKRAGNAPSTSLLIDFLKTSYLGPLDVLLLEEDMNFNSRAVSLLEVRKGDGYLLVATDVASRGVDLPQMSHIYNFDLPKTAVDYLHRAGRTCRKPFSDMKCTVTTLIVPEERFVLQKYENELMFGCEELTL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02226 396 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 28 210 IPR014001 -
Accr8g02226 396 Pfam DEAD/DEAH box helicase 43 194 IPR011545 GO:0003676|GO:0005524
Accr8g02226 396 Pfam Helicase conserved C-terminal domain 240 358 IPR001650 -
Accr8g02226 396 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 239 396 IPR001650 -
Accr8g02226 396 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 40 388 - -
Accr8g02226 396 SMART ultradead3 3 230 IPR014001 -
Accr8g02226 396 Gene3D - 224 393 IPR027417 -
Accr8g02226 396 SMART helicmild6 276 360 IPR001650 -
Accr8g02226 396 Gene3D - 25 212 IPR027417 -
Accr8g02226 396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 372 IPR027417 -
Accr8g02226 396 CDD SF2_C_DEAD 227 372 - -
Accr8g02226 396 CDD DEADc 44 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02226 Accr-Chr8 45917762 45920731 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02226 38 385 Eukaryotic Initiation Factors Gene Family AT1G72730 26.944 3.27e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02226 - - ahf:112763379 608.986