Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02225 ATGCGAAGACCTTGTTCCCCGGCATATATTAGACAGGATGGAAGAAATTGGATATGTTATGCCTACAGATGTCCAGAGGCAGGCATTGCCTTCTCTTTTATCCGGTCGCGATTGCATACTTCATGCTCAGGTTCTGGGAAGACGCTTGCATACCTGCTTCTGATATATTCCGTCATTAACACTGCAAAATCTTCTGTGCAAGCTCTTGTTCTGGTTGCTAAAGTTGCTAGGATGTTGGCAGCAAGTCCGACAGGGGTTGAGGAGGAGCACAAGTCATGTACCGTCATGGCTCTTTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGCTAAAGGCAGAGCCTCCAATGATAGTGGTAGCAACAGTGGGGAGTTTATGCCACATAATTGAAAGACAATTTTTAAAGCTTGAATCTGTGCGGGTGTTAGTAGTTGATGAGGTTGACTTTATTTTCAATTCTTCAAAGCAAGTCAGTTCCCTTCGAAAGCTTTTAACTTTGTATTCGTCATGCAATAACCGACAGACAGTTTTTGCCAGTGCATCTATACCACAACACAGACGATTTCTTCATGATTGTGTGCAGCAGAAATGGACTAAGAGTGACGTGGTCCATGTTCATGTCAGCCCAGTTGAGCCCATGCCACCACGCCTGCATCATAGATTTGTAGTATGTCATAGGAACAAGAAGCAACAACCCCTGTTATCTTTGATACAAACGGATGCACCTGAGTCGGGCATTATATTTGTCAGTGAGCAGTCTGAGAGGTCAAAACGGGCAGGAAATGCTCCATCGACGTCCCTTCTAATTGACTTTCTGAAGACTTCATATCTAGGCCCTTTAGATGTCCTCCTCCTTGAGGAAGATATGAATTTCAATTCACGAGCAGTTTCACTGTTGGAGGTAAGGAAAGGTGACGGCTATCTTCTTGTAGCAACAGATGTAGCTTCAAGAGGAGTTGACCTTCCACAAATGTCTCACATTTACAACTTTGATCTGCCTAAGACTGCCGTAGATTATCTTCATCGGGCAGGTAGGACTTGTAGGAAACCTTTTTCTGACATGAAGTGTACTGTTACCACTCTCATTGTTCCAGAGGAGCGGTTTGTTCTCCAGAAGTATGAAAATGAGTTAATGTTCGGTTGTGAAGAGCTTACTTTGTAA 1164 0.4364 MRRPCSPAYIRQDGRNWICYAYRCPEAGIAFSFIRSRLHTSCSGSGKTLAYLLLIYSVINTAKSSVQALVLVAKVARMLAASPTGVEEEHKSCTVMALLDGGTLRRHKSWLKAEPPMIVVATVGSLCHIIERQFLKLESVRVLVVDEVDFIFNSSKQVSSLRKLLTLYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVVHVHVSPVEPMPPRLHHRFVVCHRNKKQQPLLSLIQTDAPESGIIFVSEQSERSKRAGNAPSTSLLIDFLKTSYLGPLDVLLLEEDMNFNSRAVSLLEVRKGDGYLLVATDVASRGVDLPQMSHIYNFDLPKTAVDYLHRAGRTCRKPFSDMKCTVTTLIVPEERFVLQKYENELMFGCEELTL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02225 387 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 40 379 - -
Accr8g02225 387 Pfam DEAD/DEAH box helicase 43 185 IPR011545 GO:0003676|GO:0005524
Accr8g02225 387 Pfam Helicase conserved C-terminal domain 231 349 IPR001650 -
Accr8g02225 387 Gene3D - 215 384 IPR027417 -
Accr8g02225 387 CDD SF2_C_DEAD 218 363 - -
Accr8g02225 387 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 28 201 IPR014001 -
Accr8g02225 387 SMART ultradead3 3 221 IPR014001 -
Accr8g02225 387 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 363 IPR027417 -
Accr8g02225 387 Gene3D - 30 198 IPR027417 -
Accr8g02225 387 SMART helicmild6 267 351 IPR001650 -
Accr8g02225 387 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 230 387 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02225 Accr-Chr8 45917762 45920731 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02225 15 349 Eukaryotic Initiation Factors Gene Family AT3G13920 25.141 1.71e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02225 - - ahf:112763379 583.563