Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02216 ATGGCTCAGCTGCAGAGCCAAGAGCAGCAACAGCCACCTATTGATCATGCCCAGAAGACCAAGACTCTCATTTCTGCTCTCAACCTTGTCTCCCGTAACCTCCCTCTGCCTCCTGATCTTTTCAACACCGTTTCTTCCATCTATCACGGTGCTGATGATGCTTTCAGTGATGACCGCGAATGCGAGGTCCCTGATGGGAGTGGGGGTGGAGCCGGATCTGAGGAGAAACAGGGGGATGCCCATGCTGATAAGGTTTTGGATGATACCGGAAATTCTAAAGAAGATTTGTTGAGGGATCTTGAAGATGCACTAGTGAAACAACGACCAAGTTGTGTGTCAGGTTACAAATTGAAGGAAGAAAGGGAAAGCCGTTATAAAAGTCGGATTCAGCATCGGTTAAATGAACTAGAAGGATTGCCTTCAAGTAGGGGAGAGGACTTGCAGACAAAGTGCCTGCTTGAACTGTATGGACTGAAGCTAGCAGAGTTGCAGAGGAAGGTTCGATCTGATGTGAGTGCTGAATACTGGCTCAATGTTAAATGTGCATATCCTGACAGGCAGTTATTTGATTGGGGAATGATGCGGTTGCGTCGTCCTCTGTATGGTGTTGGAGATCCCTTTTCCATGGATGCCGATGATCAATTAAGGAAGAAAAGAGATGCTGAGAGATTGTCAAAATTAGAAGAGGAGGAAAAGAATCAAATTGAGACCAGAAAAAGAAAATTTTTTGCAGAAATACTTAATGCTGTTCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAACGAAGAAAACAGAGAAATGATGGAGTCCAGGCATGGCACGGAAGGCAAAGACAACGCGCAACACGGGCTGAGAAATTGAGGTTTCAAGCCTTAAAGGCTGATGATCAAGAAGCTTATATGAGAATGGTCAAAGAGAGTAAGAATGAAAGATTGACTTTGCTTCTTGAAGAAACAAATAAGTTGCTTGTGAATTTGGGAGCGGCTGTTCAACGTCAAAAGGACTCAAAACAAACAGATGGCATCGAACCTTTGGAAGACTCAGAAGCTGAACTACCAGAGTCAGATGGTTCAAAGAAGGAATCACCTGCTGAGGAATATGCTGATACAGTAGATTCTGATCATAATGGTGACACTAGTGATTTACTTGAAGGTCAACGGCAATACAACTCTGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAACCTTCTATTCTTCAAGGTGGAGAGTTAAGATCATATCAGTTAGAAGGGCTTCAGTGGATGCTTTCTTTGTTCAATAACAACCTAAATGGAATTTTGGCGGACGAAATGGGCCTGGGGAAGACAATACAAACAATTTCTTTGATAGCATATCTTATGGAGAACAAGGGTGTGACTGGGCCCCACTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGATCAATGAATTCTCGACATGGGTTCCAAGTATTACAACTGTTCTTTATGATGGACGGCTGGAAGAGCGAAAAGCAATTAAGGAGGAATTGTCAGGAGAGGGGAAGTTTAATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAGGCGTTTCTCAAGAAAATTCATTGGTACTACTTGATTGTGGATGAAGGGCATCGGTTGAAGAATCATGAGTGTGCTCTAGCTAGAACTCTTGACTCTGGCTATCAAATCCAACGTAGACTCCTGCTGACTGGAACCCCTATTCAGAACAGTTTGCAGGAATTGTGGTCCCTTCTTAATTTTCTCCTTCCAAGCATTTTCAACTCAGTTCAACACTTTGAGGACTGGTTTAATGCTCCCTTTGCGGACCGAGTTGATGTCTCTCTAACAGATGAAGAACAGCTACTGATCATTCGTCGTCTTCATCAAGTAATAAGACCCTTCATATTAAGAAGGAAGAAAGATGAGGTGGAAAAATATCTTCCAGGGAAATCTCAGGTCATACTCAAATGTGATATGTCATCATGGCAGAAAGTATATTATCAACAAGTTACTGACCTGGGCAGAGTTGGCTTGGACAATGGCACTGGGAAATCGAAGAGTCTACAGAATTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTCTTTGTGGGAGAACATAATATGTGGAACAAGGATGAAATTGTCCGAGCATCAGGGAAGTTTGAACTTCTTGACCGTTTGCTACCAAAACTTCGTAGAACTGGGCACAGAGTCCTTATGTTCTCACAAATGACTCGTCTCATGGATATTCTTGAAATTTATCTGCGACTTCATGATTTCAAGTTTCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGGACTCTGCTGCGGCAGTTCAATGCTCCTGACTCTCCATACTTTATGTTTCTTTTGAGCACCCGTGCTGGAGGCCTCGGTCTAAACTTGCAAACAGCAGATACTGTTATAATTTTTGATAGTGATTGGAACCCTCAAATGGATCAACAAGCTGAGGATCGAGCTCATCGCATTGGACAAAAGAAAGAAGTTAGGGTTTTTGTGTTGGTTAGTGTGGGATCAATCGAAGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCTAAAGTCATCCAGGCCGGACTTTTTAACACAACTTCAACAGCTCAGGACAGGAGAGAAATGTTGGAGGAGATTATGCGCAGAGGCACAAGCTCACTTGGGACTGATGTGCCAAGTGAGAGAGAAATCAACCGCCTTGCAGCTCGATCAGATGAAGAATTTTGGTTGTTTGAGAGAATGGATGAGGAGAGAAGGCAAAAGGAGAACTACAGATCTCGTCTCATGGAAGAACATGAAGTGCCAGATTGGGTATATGCTGCAACGGTTAACAAGGATGACAAGGTCAAAAGTTCTGCTTTTGGTAGTGTTACTGGGAAGCGGAAAAGAAAAGAAGTGGTATATGCCGATACGTTAAGTGATCTCCAATGGATGAAAGCTGTGGAGAATGGGGAAGATGTGTCAAGGTTTTCAGTTAAAGGGAGAAGAAGAGACCACCTGCCATCAGACAGCAACACAACTGCCGGTGATAATGTTGGGGTGGAAGAAAGTTTTTCTGAAATACAAAATGAAAGCTTCTCCATGGGGAAAGAGAGATCAAGTGAAGACTCTTTCCATGGGACCCCTGGCCCTGCCCCAAAAAGACTCAGGCAGGAAGGAATAACCACCCCAAAACATGAATACGAGGGCTTCAGAGGAAGTGGTTTGAATGAGCATATGTTTTCATGGAATACCATTAGAAAGAAAAGAACAAGCAGTCTCACTCAGAGCTTGTCGTTTTCTGATTCTAGAGGGCAGAGTTCTAATGGAAGAGGAAATTGGAGCTGA 3366 0.4299 MAQLQSQEQQQPPIDHAQKTKTLISALNLVSRNLPLPPDLFNTVSSIYHGADDAFSDDRECEVPDGSGGGAGSEEKQGDAHADKVLDDTGNSKEDLLRDLEDALVKQRPSCVSGYKLKEERESRYKSRIQHRLNELEGLPSSRGEDLQTKCLLELYGLKLAELQRKVRSDVSAEYWLNVKCAYPDRQLFDWGMMRLRRPLYGVGDPFSMDADDQLRKKRDAERLSKLEEEEKNQIETRKRKFFAEILNAVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKQTDGIEPLEDSEAELPESDGSKKESPAEEYADTVDSDHNGDTSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMENKGVTGPHLIVAPKAVLPNWINEFSTWVPSITTVLYDGRLEERKAIKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWYYLIVDEGHRLKNHECALARTLDSGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVQHFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSSWQKVYYQQVTDLGRVGLDNGTGKSKSLQNLTMQLRKCCNHPYLFVGEHNMWNKDEIVRASGKFELLDRLLPKLRRTGHRVLMFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGTLLRQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFERMDEERRQKENYRSRLMEEHEVPDWVYAATVNKDDKVKSSAFGSVTGKRKRKEVVYADTLSDLQWMKAVENGEDVSRFSVKGRRRDHLPSDSNTTAGDNVGVEESFSEIQNESFSMGKERSSEDSFHGTPGPAPKRLRQEGITTPKHEYEGFRGSGLNEHMFSWNTIRKKRTSSLTQSLSFSDSRGQSSNGRGNWS 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02216 1121 MobiDBLite consensus disorder prediction 1098 1121 - -
Accr8g02216 1121 Pfam SNF2-related domain 416 704 IPR000330 GO:0005524|GO:0140658
Accr8g02216 1121 Gene3D - 644 943 IPR027417 -
Accr8g02216 1121 CDD SF2_C_SNF 714 847 - -
Accr8g02216 1121 MobiDBLite consensus disorder prediction 56 91 - -
Accr8g02216 1121 SMART SnAC_2 929 991 IPR029295 GO:0042393
Accr8g02216 1121 MobiDBLite consensus disorder prediction 1017 1041 - -
Accr8g02216 1121 MobiDBLite consensus disorder prediction 334 383 - -
Accr8g02216 1121 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 425 591 IPR014001 -
Accr8g02216 1121 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 726 893 IPR001650 -
Accr8g02216 1121 Gene3D - 381 637 IPR038718 -
Accr8g02216 1121 Pfam Helicase conserved C-terminal domain 723 836 IPR001650 -
Accr8g02216 1121 MobiDBLite consensus disorder prediction 1007 1068 - -
Accr8g02216 1121 PANTHER SNF2/RAD54 HELICASE FAMILY 157 1014 - -
Accr8g02216 1121 FunFam Probable ATP-dependent DNA helicase CHR12 644 942 - -
Accr8g02216 1121 Coils Coil 211 241 - -
Accr8g02216 1121 MobiDBLite consensus disorder prediction 76 91 - -
Accr8g02216 1121 MobiDBLite consensus disorder prediction 353 382 - -
Accr8g02216 1121 Coils Coil 927 947 - -
Accr8g02216 1121 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 638 IPR027417 -
Accr8g02216 1121 Pfam Snf2-ATP coupling, chromatin remodelling complex 925 991 IPR029295 GO:0042393
Accr8g02216 1121 SMART ultradead3 409 599 IPR014001 -
Accr8g02216 1121 FunFam Chromatin structure-remodeling complex protein SYD 404 647 - -
Accr8g02216 1121 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 640 890 IPR027417 -
Accr8g02216 1121 SMART helicmild6 752 836 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02216 Accr-Chr8 45834056 45843167 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02216 395 863 RAD5 or RAD16-like Gene Family AT1G02670 26.964 8.03e-34 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr8g02216 SNF2_N 8.8e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02216 - - pcin:129308606 2082.37