LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr8g02182	ATGAATGGTTCTGCAAGTTTTGAGCCAGAGGACTCTGAGTTCGTTGAAGTTGATCCCACTGGAAGATATGGAAGATATAACGAAATTCTTGGCAAAGGGGCTTCAAAGACAGTTTACAGAGCATTCGATGAGTATGAAGGGAGAGAAGTAGCATGGAATCAAGTGAAGCTCTACGATTTTCTGCAGAATCCTGAAGATCTTGAGAGATTATACTCTGAAATTCATCTTCTCAAGACCTTGAAACACAAAAGCATCATGAAGTTCTATACTTCCTGGGTTGATACTGCTAATAGGCATATTAACTTCGTCACTGAGATGTTCACCTCTGGCACTCTCAGACAGTACAGGTTGAAACACAAAAGAGTTAACATTAGAGCTGTGAAGCATTGGTGCAGGCAGATTTTGGAAGGGCTCCTTTATCTCCATAGTCATGATCCTCCTGTGATCCACAGAGACCTCAAATGTGACAACATTTTCATCAATGGCAATCAAGGGGAAGTCAAAATTGGTGATCTTGGCCTCGCTGCGATTCTCCGCAAATCTAAGGCTGCACGTTGCGTTGGCACACCAGAATTTATGGCTCCGGAAGTGTATGAAGAGGATTATAATGAATTAGTTGATATATACTCTTTTGGAATGTGCATCTTGGAGATGGTGACATTTGAATATCCTTACAGTGAATGCACCCATCCTGCTCAAATCTACAAGAAAGTTGTCTCTGGAAAGAAACCAGAGTCTCTCTTCAAAGTAAAGGATCCTGAGGTTAGACAATTTGTAGAGAAATGCTTAGCAACTGTGTCCCTTCGGGTTTCTGCAAAAGAACTTCTGAAAGACCCTTTTCTCCAAATCGATGATTACGGGTCTGACATGAGATCACTTCGGTATCAAGGAGATTGCTATGAAGTAACCCCTTTATATAGACAACCTCTTAATGGAGTTCACAGCAGTAACAACTCAATCAATGAGTACACTGATTATTACAGTGGTTATGGACCAGAATCTGAGCTAACCAGCGAAATTGATCTCTTTGAAAGTGATGAAGATGATAATTTGGCTGAAGCTGATACTGTAATCAAAGGCAGGAGAAGAGAAGATGATGGCATTTTTCTCAGACTTAGAATAGCAGATAAGGAAGGTCGAGTTCGAAACATCTACTTCCCATTTGACATAGAGACCGATACAGCATTGAGTGTAGCAAATGAAATGGTGGTTGAGCTGGACATAACTGACCAAGATATAACAAAAATAGCAGACATGATAGATAATGAAATAGCAAACTTGGTCCCAGAGTGGAAAACTGGACCCAGAACAGAGGAAAATCCAGAGTGCACAAGTGAAAGTCTCTGCATCAATTGTGCTTCTCGTGGCACCTTCTTTGAGTATGTATCATCAGACAGCCCATCAGCTAAGAAGCTACAATTTCTTCATTGTTCCAGAGATGGCTGTGCAGCGATTCATGGCCGTTTCGAGGAGATCACATACCAAGTTGAGGGGTCTGAAAATTGTACTACAGATGGTCCTCCAGCTGCTTCAAGTCAATCTACTGGTATTCACTATACTGATATCTGGGCTCAAAGAGATGAGCCAGAACCAATTTCAGAGGAGTTCAGAGATATACATGGTGATAAATCACATGAGGCATCAAACAAATCAAAAGTTGAAGAGGATGAGAGAAGTATTATTATTGGGGATGATCAAAGTAATCCCAACTTAAAAGACACATTTTCTAATCAAGAATTAGATTGTGTTTTCCTGGAATATGAGAATGAAATTAGGCAAGAACTAAGATGGCTTAAAGCAAAGTACCAAATGCAGTTAAGGGAGCTAAGAGACCAGCAATTAGGTGGAACACCAAAATTTGCAAGCACTTCTCCTGATCCTGAAGAATCAGATGAGCATAGGAAATATGGTGGGGACCCAAATCAACCAGTAACAGCTCACTTGAAGTTACGGAACAATAAACCGTTATTGAGGCTTTTAACCACCTGGAAGCGATTTTCAGCTGATGCAGAGAAGAACAAGTTCTCAGCTATGGCTAATATGATGCAAGATATGGATGAGTCTTGTGGAGCTAATAGTCCTGAGCAGATGGTCACAGCTAATGATTTCTTTGCTGGATCTTTTCTTCCACACTCGCTTCACAGAGCGACCTCTCTTCCAGTTGATGCAATAGATGCATAG	2181	0.4094	MNGSASFEPEDSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGREVAWNQVKLYDFLQNPEDLERLYSEIHLLKTLKHKSIMKFYTSWVDTANRHINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILEGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSKAARCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVVSGKKPESLFKVKDPEVRQFVEKCLATVSLRVSAKELLKDPFLQIDDYGSDMRSLRYQGDCYEVTPLYRQPLNGVHSSNNSINEYTDYYSGYGPESELTSEIDLFESDEDDNLAEADTVIKGRRREDDGIFLRLRIADKEGRVRNIYFPFDIETDTALSVANEMVVELDITDQDITKIADMIDNEIANLVPEWKTGPRTEENPECTSESLCINCASRGTFFEYVSSDSPSAKKLQFLHCSRDGCAAIHGRFEEITYQVEGSENCTTDGPPAASSQSTGIHYTDIWAQRDEPEPISEEFRDIHGDKSHEASNKSKVEEDERSIIIGDDQSNPNLKDTFSNQELDCVFLEYENEIRQELRWLKAKYQMQLRELRDQQLGGTPKFASTSPDPEESDEHRKYGGDPNQPVTAHLKLRNNKPLLRLLTTWKRFSADAEKNKFSAMANMMQDMDESCGANSPEQMVTANDFFAGSFLPHSLHRATSLPVDAIDA	726

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr8g02182	726	FunFam	probable serine/threonine-protein kinase WNK9	107	286	-	-
	Accr8g02182	726	Pfam	Oxidative-stress-responsive kinase 1 C-terminal domain	369	424	IPR024678	GO:0004674\|GO:0005524
	Accr8g02182	726	MobiDBLite	consensus disorder prediction	613	644	-	-
	Accr8g02182	726	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	148	160	IPR008271	GO:0004672\|GO:0006468
	Accr8g02182	726	SMART	serkin_6	24	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr8g02182	726	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	9	626	-	-
	Accr8g02182	726	FunFam	Probable serine/threonine-protein kinase WNK1	9	105	-	-
	Accr8g02182	726	Pfam	Protein kinase domain	27	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr8g02182	726	ProSiteProfiles	Protein kinase domain profile.	24	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr8g02182	726	FunFam	probable serine/threonine-protein kinase WNK9	366	450	-	-
	Accr8g02182	726	CDD	STKc_WNK	22	281	-	-
	Accr8g02182	726	Gene3D	Phosphorylase Kinase; domain 1	8	105	-	-
	Accr8g02182	726	Gene3D	Transferase(Phosphotransferase) domain 1	107	286	-	-
	Accr8g02182	726	Gene3D	-	367	449	-	-
	Accr8g02182	726	SUPERFAMILY	Protein kinase-like (PK-like)	18	282	IPR011009	-
	Accr8g02182	726	Coils	Coil	592	612	-	-
	Accr8g02182	726	MobiDBLite	consensus disorder prediction	537	557	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr8g02182	Accr-Chr8	45474216	45477137	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr8g02182	1	492	MAP Kinase Kinase Kinase	AT3G22420	60.338	0.0	615

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Accr8g02182		Pkinase	6.3e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr8g02182	K08867		-	gmx:100804179	1099.35