Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02077 ATGTATTGGGGAGGCATGGCTAGTAACAACATGGGTTGGGGTATGAATATGTTAGAGGAAGAAGGTTGGAGGAAAGGTCCTTGGACTGCTGAAGAAGACAGATTGCTTATTGAATATGTCAGGCTTCATGGTGAAGGCAGATGGAACTCTGTCTCTAGGCTTGCAGGATTGAAAAGAAATGGCAAAAGCTGCAGATTGAGGTGGGTGAATTATTTGAGGCCTGATCTCAAGAAGGGTCAGATAACACCTCAGGAAGAGAGTATCATTCTTGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTACCAGGAAGAACTGACAATGAGATTAAGAACTACTGGAGGACTCATTTCAAGAAGAAGGCGAAAAATTCTCCTGATTCTGCAGAAAAGGCGAAGAATCGCCTCATAAGGAGGCAACAATTTCAGCAGCAACAACAGCAAATGCAGCAGCAACAACAGCAACAGCAGCAACAGCAGCAGCAGCAACAACAACTTCAGTTCAACTTGGACATCAAAGGGATTATGGCTCTTCTGGAGGAAAACGATCATAGGGTAGTGACCATGCCTTGTTTGTCTCAAATGAGGCAAGAAATGTATCAGAATACCATGGAAGAACAAGGCTGCTTATACTCTATGCTCAATGGCAATGCCTCCGTACCAGAACCTTCAAATGATGATACTTTCTGGGATGGCCTTTGGAACTTGGATGATCTTCATGGAAATTTCAGCGCAGCAGCAAGCAAAAACAATCTACACAATTTAGTTGCTCCCTTCTGCTAG 798 0.4411 MYWGGMASNNMGWGMNMLEEEGWRKGPWTAEEDRLLIEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKNSPDSAEKAKNRLIRRQQFQQQQQQMQQQQQQQQQQQQQQQQLQFNLDIKGIMALLEENDHRVVTMPCLSQMRQEMYQNTMEEQGCLYSMLNGNASVPEPSNDDTFWDGLWNLDDLHGNFSAAASKNNLHNLVAPFC 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02077 265 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 18 209 IPR044676 GO:0003700|GO:0006355|GO:0043565
Accr8g02077 265 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Accr8g02077 265 Gene3D - 82 126 - -
Accr8g02077 265 SMART sant 77 125 IPR001005 -
Accr8g02077 265 SMART sant 24 74 IPR001005 -
Accr8g02077 265 FunFam MYB-related transcription factor 82 126 - -
Accr8g02077 265 Pfam Myb-like DNA-binding domain 78 122 IPR001005 -
Accr8g02077 265 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Accr8g02077 265 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Accr8g02077 265 Coils Coil 144 174 - -
Accr8g02077 265 CDD SANT 27 72 IPR001005 -
Accr8g02077 265 Gene3D - 25 77 - -
Accr8g02077 265 FunFam Myb transcription factor 25 77 - -
Accr8g02077 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 72 IPR017930 -
Accr8g02077 265 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Accr8g02077 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Accr8g02077 265 CDD SANT 82 123 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02077 Accr-Chr8 44398168 44399279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02077 18 265 MYB Transcription Factor Family AT4G13480 55.431 2.58e-89 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr8g02077 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02077 K09422 - gmx:100795981 372.474