Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02062 ATGACTCTGGGTTTACTAGGTGGTGGTGGTGGCGACAATGGTGGCTCTTCTGGGGCTACCCCAAATGAGTCTTCAGTGTCAAATGCTAAGGTTCTGGGTCAAGAATGTTCATCATCGTACAAAGGTGAGGCTGAACTTGAACTGGGTTTGGGTCTGAGCCTTGGTGGTGGTGGTGGTGGGAAGGCCAAGCCTTCTTCTGCATGGGGTGAGTGTCGTCGTATTTTGACGGCTAAAGACTTCCCTTCTGGAGTCTCTCATGGACCTTCTGTTGCTGCTTCTCGTTTCTCAGATAGAGTCAGTACTGTGGGTGGCTCTGTTTCTGGCACTAAGAGAGCTGCCGACTCTGTCTCTCATGAAGCTGGATCTCCCACTGCTGGCAGTCAAGTTGTTGGGTGGCCACCCATCAGGGCATATAGGATGAATAGCTTGATTAACCAAGCAAAGGCTCAGAGAGCTGAAGAAGATAAATCCGGCGGCGACAAGAATAATCCTGATGATGTTTCAGTTACTAAAACGGGCGCTGTCAACAAGACTGAAAAAAACCATCTTGGTTTTGTGAAGGTGAATATGGATGGAGTTCGCATTGGGAGAAAGGTAGATTTGAATTCTCATTCAAGCTATGAGAATTTAGCTCAAACTCTGGAAGACATGTTTTTCATGCCTGCTAAATCAACTGGGTGTGAGAAAGAGCCCGGAATGAAACTCTCTAAGCTTTTGGATGAAACATCTGAATTTGTGCTGACATATGAAGATAAAGAGGGTGATTGGATGCTTGTGGGAGATGTTCCCTGGAGGATGTTCCTCAGCTCAGTGAGAAGGCTCCGAATCATGAGAACATCTGAGGCCAATGGACTTGCTCCTAGATATCAAGAGAAGAATGAGAGGCTAAGGATCAAACCCATTTAG 906 0.4669 MTLGLLGGGGGDNGGSSGATPNESSVSNAKVLGQECSSSYKGEAELELGLGLSLGGGGGGKAKPSSAWGECRRILTAKDFPSGVSHGPSVAASRFSDRVSTVGGSVSGTKRAADSVSHEAGSPTAGSQVVGWPPIRAYRMNSLINQAKAQRAEEDKSGGDKNNPDDVSVTKTGAVNKTEKNHLGFVKVNMDGVRIGRKVDLNSHSSYENLAQTLEDMFFMPAKSTGCEKEPGMKLSKLLDETSEFVLTYEDKEGDWMLVGDVPWRMFLSSVRRLRIMRTSEANGLAPRYQEKNERLRIKPI 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02062 301 FunFam Auxin-responsive protein 178 289 - -
Accr8g02062 301 SUPERFAMILY CAD & PB1 domains 185 277 - -
Accr8g02062 301 MobiDBLite consensus disorder prediction 103 128 - -
Accr8g02062 301 Gene3D - 177 291 - -
Accr8g02062 301 MobiDBLite consensus disorder prediction 15 30 - -
Accr8g02062 301 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 45 284 IPR003311 GO:0005634|GO:0006355
Accr8g02062 301 MobiDBLite consensus disorder prediction 146 174 - -
Accr8g02062 301 Pfam AUX/IAA family 76 288 IPR033389 -
Accr8g02062 301 MobiDBLite consensus disorder prediction 1 30 - -
Accr8g02062 301 ProSiteProfiles PB1 domain profile. 183 281 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02062 Accr-Chr8 44090591 44092780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02062 186 299 B3 DNA Binding Superfamily AT1G59750 33.043 2.45e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Accr8g02062 AUX_IAA 8.1e-63 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02062 K14484 - qsa:O6P43_003143 360.147