Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02054 ATGGCGGCTTCTGCAGCTGCGGCTATAGGATCATCATTCTCTTCCTCCATCAACACTCTCAAGTGCCTTCGTTCATCCAAAAACTTGTCCTCTGGACTCCTCCTAAGAATTTCATCAAACCGTGTATTAGCGTCGTTGTCACCATCGCACTTGGTGGAACCACTTTCCTTTGATACCAATGTCAATAAGTTGTGGGTTTCAAGGGTTTCGGCACAAGAAGAGCTTGCGGTGGTCAATGAGGTTGATGATGGTTCAGTTGAAGAGAATGAGGAGGGAGAAAAGGATGTGGTAGAAGAAGGAGAGGCTGAGGAAGTCTCTGTCCACACTAAGCTTTATTTTGGGAACTTGCCTTACAGTGTTGATAGTGCAGAACTCGCGGCGATTATTCAGGATTATGGCAGCCCTGAACTCATTGAGGTTCTATACAACAGAGATACTGGAAAAAGCAGAGGTTTTGCATTTGTTACAATGAGTAGTGTCGAAGATTGCAACGCAGTGATAGAAAACCTTGATGGAAGGGAATACTTGGGTCGAACCCTGCGAGTGAACTTCTCTGACAAACCTAAACCGAAAGAACCCTTGTACCCTGAAACTGAATATAAGCTTTTTGTTGGGAACTTGTCATGGTCTGTAACTTCTGAGAGTCTTACAGAAGCTTTTCAAGAATATGGAAATGTGGTTGGAGCTAGGGTCTTATACGATGGGGAAACAGGAAGATCCCGTGGTTATGGCTTTGTTTGCTATCCAACCAAATCAGAAATGGAAACTGCCCTTTCATCCATGAATGGAGTGGAACTGGAAGGACGAGCAATGCGTGTAAGCTTGGCTGAAGGGAAACGATCGCAGAGTCAATAG 855 0.448 MAASAAAAIGSSFSSSINTLKCLRSSKNLSSGLLLRISSNRVLASLSPSHLVEPLSFDTNVNKLWVSRVSAQEELAVVNEVDDGSVEENEEGEKDVVEEGEAEEVSVHTKLYFGNLPYSVDSAELAAIIQDYGSPELIEVLYNRDTGKSRGFAFVTMSSVEDCNAVIENLDGREYLGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTEAFQEYGNVVGARVLYDGETGRSRGYGFVCYPTKSEMETALSSMNGVELEGRAMRVSLAEGKRSQSQ 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02054 284 FunFam 31 kDa ribonucleoprotein, chloroplastic 71 190 - -
Accr8g02054 284 CDD RRM2_NsCP33_like 201 276 - -
Accr8g02054 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Accr8g02054 284 SMART rrm1_1 201 274 IPR000504 GO:0003723
Accr8g02054 284 SMART rrm1_1 110 183 IPR000504 GO:0003723
Accr8g02054 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 278 IPR000504 GO:0003723
Accr8g02054 284 Gene3D - 190 284 IPR012677 -
Accr8g02054 284 PANTHER OS02G0815200 PROTEIN 48 280 - -
Accr8g02054 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 181 IPR000504 GO:0003723
Accr8g02054 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 271 IPR000504 GO:0003723
Accr8g02054 284 Gene3D - 67 189 IPR012677 -
Accr8g02054 284 SUPERFAMILY RNA-binding domain, RBD 106 192 IPR035979 GO:0003676
Accr8g02054 284 FunFam 28 kDa ribonucleoprotein, chloroplastic 191 282 - -
Accr8g02054 284 SUPERFAMILY RNA-binding domain, RBD 193 281 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02054 Accr-Chr8 44070155 44072169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02054 109 279 Eukaryotic Initiation Factors Gene Family AT3G16380 32.447 9.03e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02054 - - cave:132178760 378.252