Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02036 ATGGATTCGGATCAAGGGAAGCTTTTTATTGGTGGGATATCGTGGGACACGACCGAGGACAAGCTCAAAGATCATTTCAGCAACTTCGGCGATGTTTTGCACGCCTCCGTTATGAGAGAGAAGAGCACTGGGAAGCCCAGAGGCTTTGGGTTCGTTGTGTTCGCAGATCCTTCGATTCTCGATAGGGTTCTCGAAGAGAAGCACGTAATCGATGGAAGAACGGTGGATGCCAAGAAGGCCCTCTCCAGAGAGGATCAACAGATTTCAGGCACTTCCAGGGCTGGAAATCCCAACTCTTACAGAAATTCTGGAAATGGTGGAAATATGAGGACCAAAAAGATATTTGTTGGAGGGTTGCCTCCTACGTTGACTGAAGAGAAGTTTCGTCAGTATTTTGAGGCCTATGGTCATGTTACTGATGTAGTAGTAATGTATGACCAGAATACTGGACGGCCACGTGGATTTGGATTTATTTCATTTGACACTGAAGATGCAGTTGACAGGGTTTTGCACAAGCCATTTCATGATTTAAATGGTAAGCAAGTAGAAGTGAAGCGTGCACTTCCAAAGGATGCTAATCCAGGTGCAAGTGGCCGTATGGGTGGTGCAGGGGGAGGTGGCAGTGGTTATCAGGGGTACGGGGCATCTGGTGGCAACCAGAATGCATATGATGGCCGGATGGATTCTGGTAGGTATGTGCAGCCTCAAAGCGCCGGGGGTGGATTTCCACCTTATGGTTCTTCTGGATATAGTGCTCCTGGGTATGGTTATGGTCCTGCTAATAATGGCATGGGTTATGCCGGATATGGAAGTTATGGTGGTGCAAGCACTGGGTATGGTGGACCTGCTGGTGCAACCTATGGGAATCCCAACATCCCTAATGCTGCATATGCTGGTGGTCCGCCTGGTGGCCCAAGGAGTTCGTGGCCTGCTCAAGCTCCCTCTGGTTATGGTTCTATGGGCTATGGGAATACTGCTGCTTGGGGTGCTACAGGTGGTGGTGCTGGATCTGGTGTCAGCAGCGGCCCTGGTTCAGCCCCTGCAGGTCAGTCACCCAGTGGAGCTGGTGGTTATGGGAATCAAGGGTATGGTTATGGTGGTTATGGTGGAAGTGATAGTTCTTATGGGAACCCTGGCACATATGGTGCTGTTGGCGGTCGTTCTGGAAGTGCGCCAAACAGCTATGCCAGTGGTCCAGGAGGAAATGAACCACAAGGAAGTGGTGGCAGCTACAATGGAAGTGGCTATGGTGATGCTAATGGGAATTCAGGATATGGAAATGCTGCCTGGAGATCAGAACCTGCACAACCATCTGGAAATTATGGGACTCCTCAAGTAAATGGTCCTCATGGTGGGCAAGTTGGTTATGGCAGCAGCTATGGTGGTGCACAGTCACGGCAGGCCCAACAGCAGTAA 1416 0.5035 MDSDQGKLFIGGISWDTTEDKLKDHFSNFGDVLHASVMREKSTGKPRGFGFVVFADPSILDRVLEEKHVIDGRTVDAKKALSREDQQISGTSRAGNPNSYRNSGNGGNMRTKKIFVGGLPPTLTEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFISFDTEDAVDRVLHKPFHDLNGKQVEVKRALPKDANPGASGRMGGAGGGGSGYQGYGASGGNQNAYDGRMDSGRYVQPQSAGGGFPPYGSSGYSAPGYGYGPANNGMGYAGYGSYGGASTGYGGPAGATYGNPNIPNAAYAGGPPGGPRSSWPAQAPSGYGSMGYGNTAAWGATGGGAGSGVSSGPGSAPAGQSPSGAGGYGNQGYGYGGYGGSDSSYGNPGTYGAVGGRSGSAPNSYASGPGGNEPQGSGGSYNGSGYGDANGNSGYGNAAWRSEPAQPSGNYGTPQVNGPHGGQVGYGSSYGGAQSRQAQQQ 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02036 471 CDD RRM2_Hrp1p 113 190 - -
Accr8g02036 471 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Accr8g02036 471 FunFam heterogeneous nuclear ribonucleoprotein 1 107 226 - -
Accr8g02036 471 MobiDBLite consensus disorder prediction 333 353 - -
Accr8g02036 471 MobiDBLite consensus disorder prediction 80 113 - -
Accr8g02036 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Accr8g02036 471 SUPERFAMILY RNA-binding domain, RBD 3 110 IPR035979 GO:0003676
Accr8g02036 471 SUPERFAMILY RNA-binding domain, RBD 111 219 IPR035979 GO:0003676
Accr8g02036 471 Gene3D - 4 88 IPR012677 -
Accr8g02036 471 MobiDBLite consensus disorder prediction 367 471 - -
Accr8g02036 471 MobiDBLite consensus disorder prediction 84 109 - -
Accr8g02036 471 MobiDBLite consensus disorder prediction 390 447 - -
Accr8g02036 471 Gene3D - 108 230 IPR012677 -
Accr8g02036 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Accr8g02036 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Accr8g02036 471 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Accr8g02036 471 SMART rrm1_1 7 78 IPR000504 GO:0003723
Accr8g02036 471 SMART rrm1_1 113 185 IPR000504 GO:0003723
Accr8g02036 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Accr8g02036 471 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02036 Accr-Chr8 43955268 43957518 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02036 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 25.126 6.79e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02036 K14411 - gmx:100811267 528.865