Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr8g01991 | ATGGCAGATCTTGATGGCAATGTAAATGTTGAGCAAGCACTTATTGCTTTGAAAAAAGGCACTCAGTTAATTAAGTATAGTCGGAAAGGAAAGCCAAAACTTTGTCCATTCAGACTCTCACCGGATGAAACAACATTGATCTGGATAAGTCACAGAGGGGAAAGAAATCTGAATTTGTCTTGTGTTTCACAGATAATCTCTGGACAGAGAACGGCTGTCTTCAGAAGATATTTGTGTCCTGAAAAGGATTCTCTATCATTTTCTCTTCTTTACAGAAACTCAGAACGGTCACTTAATCTGAATTGTAAGGATAAAGCTGAAGCAGATGTATGGTTTACAGGCCTCAAGGCATTAATATCTCCTGGACGACGTCAGAGGCATAGGCATACCAGAAGTGACTTTTCTAATCTGCAAGGGAGCATTGACTTTACTCATGATAGTCATCCTGTTAGTGCAACGGTAAAGTATCCTTCAAGCAGTCCTCATGGTCGAGTTTCCGTTGATTCAGTTTCTCGTGACACTTTATTCAATTGGGCAAACTCAGATGTGGGGTTAGAACGTGTAAATATGCAATTGAGGGGAGGAGCTGGAGACAATTTCCGTCTTAGTGTGTCAAGTGCAGGATCTGGAATAGATGACATCGAATCACTTGGAGATGTTTTTGTATGGGGAGAGGTTTGGGCAGATGGGGTTTCTTCTGATGGATTGGGGAATCAAGTCCCTTTGAAGACAGATGTCTTGATTCCCAAGTCATTAGAGTCAAATGTTGTTCTTGATGCTCAACAGATTGCATCTGGCGTCCGCCATACCGCTCTAGTTACAAGGCAAGGAGAGCTTTTTACTTGGGGAGAAGAATGTGGAGGAAGACTTGGTCATGGGATTGATAAAGACTTTAGCCGCCCTTGTCTGGTTGAATTCCTGGCAGTCACTAACGTGGAATTTGTAGAGTGTGGAGAGTATCATACATGTGCTGTATCTACATCCGGTGATTTATTCTCTTGGGGTGATGGTACCCACGGTGCTGGACTTCTTGGTCATGGAAATGACATTAGCCACTGGATACCAAAGAGAATCATAGGCCCTTTAGAAGGACTTCAAGTTATATCTGTTGCATGTGGCACATGGCATTCAGCATTGGCAACCTCCAATGGGAAATTGTTTACCTTTGGTGATGGAGCTTTTGGTGTCTTGGGCCATGGAGATGTACAGAGTGTGCCATATCCAAAGGAGGTGCAATCTTTGAGCGGACTAAAGACCGTTAAGGTTGCATGTGGACTATGGCACACTGCGGCTATTGTAGAGGTTATGAGCCAAACTGGTTCAAATGTCTCATCTAGGAAGCTCTTTACTTGGGGTGATGGTGACAAATATCGTTTGGGTCATGGTAACAAGGAGACTTACCTCCAACCCACCTGTGTCTCTTCACTTATTGAATACAATTTCCAACAGGTAGCGTGTGGGCACATTTTGACAGTCGCCCTCACTACAGCAGGTCAAGTGTTCACTATGGGAGGCACGGCATATGGTCAACTAGGGAATCCTCTCTCTGATGGAAAATCACCTATCATGGTACAAGATAAGCTGGTTGGTGAATTTGTTGAGGAAATAGCGTGTGGAGAACATCATGTTGCTGCATTGACGTCAAGAAGTGAACTATATACTTGGGGGAAAGGTGCCAATGGAAGATTGGGACACGGAGACACACACGATCGAAAATCTCCCTCATTGGTTGAATGCTTGAAAGATAGGCATGTAAAAAGTATCTCATGTGGCTCAAACTTCATGACTTGTATTTGCATCCACAAATGGGTCTCTGGAGTTGACCAATCTGTTTGCTCTGGTTGCCGGCAAGCATTTGGTTTTACTAGAAAAAGGCACAATTGTTATCAATGTGGATTGGTGCATTGTCATTCTTGTTGCTCTAAGAAGGCATTGAAAGCAGCATTAGCTCCAACGCCCGGAAAACCACATCGTGTCTGTGATGCATGTTATGCAAAACTTAAAACTGCTGAGATCGGCCATGCTTCCACTTTTAGCAGAGGAACTACGCCTCCACGTAGATCAATAGATAATAGAGAACGAATAGAATGTGTAGAGACAAAGTCTTCAAGAGTTCTCTTATCTCCCATCACAGAACCAGTAAAATACCTTGAGATAAGGACTAATAAACCAGGAACCAGATCTGATTCCTCTTCCATAGTTCGAGGTTCTCAAGTTCCATCTCGTTTGCAGTTAAAAGATGTTGCATTTCCAAGTTCACTGAACACCATTCAGAATGCTTTCAAGCCTGTTGTTATACCTCCTAGTCCACTACGAACCCCACCTGCCAATTCTAGATCCTCATCACCATATGCAAGAAGACCCAGCCCACCTCGTTCACCCGTTCCCGGATTTTCTAAAAGTATTATAGATAGTTTGAGGAGGACCAATGACATTTTGAATCAAGAAGTCTCGAAAATGCATAAACAAATTCGAAGTTTGAAGCAGAAGAACGAAACACGAGATAGGGAGATACAGAAGCTTCAGAAAAATGTTGAGGAAGCCACCTCAATGGCTGGGGAGATATATTCCAAGCATCAAGTAGCAAATGAATTTATCAAGTCCATAAAGGATCAGCTGAAGGAAATGACCAACAAGCTGCCACCGGCGGTTTCTGGCTGTAATAGCTTGAAAATCATGCACGACCAAGCAGAAGATTTTCTAAGAAAAATTGCAGAATCTGAAACTCCTTCCTCTTTACCATCAAACTTACAGTCTGATCAACTAAATGCAACTCCTGATATAACTGCTTCAGATGGCGACACTGCTAAACCACGAGAACTAAAACCGGAGGACAATGAAGATGCTGCAGGAATCGATTCATCTCAAGATGGTGGGAAAGTTCAAGAAAGTAATGGACCGTCTACTTCTTCTGGAGGAGCAGCAGTGCCTCCACAAAGTTCAGAACATGGTTCAGGCTCACTGAACTCTTCAAGACCTAGGATTGAAGAAGAAACAGAAATCGATGAACAATTTGCACCCGGTGTGTTCGTGACACTCATAGTGCGGCCCGGTGGTAATAAAATTTTCAAACGAGTTAGGTTCAGCAAGCGAAGGTTCGACGAACAACAGGCAGAAGAATGGTGGAGCAAAAACAAAGATAAGGTGGTTAGGACATATAGTCCATCAGCAACAAATGTTGCAGCCACAGGGCCACCTAGCACTCGCACTCCATCACCACCACCACCACCTGTTGAAGAGAACGTTGAGTCTTCACCTTCCTAA | 3264 | 0.4341 | MADLDGNVNVEQALIALKKGTQLIKYSRKGKPKLCPFRLSPDETTLIWISHRGERNLNLSCVSQIISGQRTAVFRRYLCPEKDSLSFSLLYRNSERSLNLNCKDKAEADVWFTGLKALISPGRRQRHRHTRSDFSNLQGSIDFTHDSHPVSATVKYPSSSPHGRVSVDSVSRDTLFNWANSDVGLERVNMQLRGGAGDNFRLSVSSAGSGIDDIESLGDVFVWGEVWADGVSSDGLGNQVPLKTDVLIPKSLESNVVLDAQQIASGVRHTALVTRQGELFTWGEECGGRLGHGIDKDFSRPCLVEFLAVTNVEFVECGEYHTCAVSTSGDLFSWGDGTHGAGLLGHGNDISHWIPKRIIGPLEGLQVISVACGTWHSALATSNGKLFTFGDGAFGVLGHGDVQSVPYPKEVQSLSGLKTVKVACGLWHTAAIVEVMSQTGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSSLIEYNFQQVACGHILTVALTTAGQVFTMGGTAYGQLGNPLSDGKSPIMVQDKLVGEFVEEIACGEHHVAALTSRSELYTWGKGANGRLGHGDTHDRKSPSLVECLKDRHVKSISCGSNFMTCICIHKWVSGVDQSVCSGCRQAFGFTRKRHNCYQCGLVHCHSCCSKKALKAALAPTPGKPHRVCDACYAKLKTAEIGHASTFSRGTTPPRRSIDNRERIECVETKSSRVLLSPITEPVKYLEIRTNKPGTRSDSSSIVRGSQVPSRLQLKDVAFPSSLNTIQNAFKPVVIPPSPLRTPPANSRSSSPYARRPSPPRSPVPGFSKSIIDSLRRTNDILNQEVSKMHKQIRSLKQKNETRDREIQKLQKNVEEATSMAGEIYSKHQVANEFIKSIKDQLKEMTNKLPPAVSGCNSLKIMHDQAEDFLRKIAESETPSSLPSNLQSDQLNATPDITASDGDTAKPRELKPEDNEDAAGIDSSQDGGKVQESNGPSTSSGGAAVPPQSSEHGSGSLNSSRPRIEEETEIDEQFAPGVFVTLIVRPGGNKIFKRVRFSKRRFDEQQAEEWWSKNKDKVVRTYSPSATNVAATGPPSTRTPSPPPPPVEENVESSPS | 1087 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr8g01991 | 1087 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 999 | 1053 | IPR013591 | - | |
| Accr8g01991 | 1087 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 446 | 497 | IPR000408 | - | |
| Accr8g01991 | 1087 | Pfam | FYVE zinc finger | 602 | 668 | IPR000306 | GO:0046872 | |
| Accr8g01991 | 1087 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 54 | 874 | - | - | |
| Accr8g01991 | 1087 | Gene3D | - | 6 | 128 | IPR011993 | - | |
| Accr8g01991 | 1087 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 263 | 273 | IPR000408 | - | |
| Accr8g01991 | 1087 | Gene3D | - | 196 | 339 | IPR009091 | - | |
| Accr8g01991 | 1087 | Gene3D | - | 340 | 443 | IPR009091 | - | |
| Accr8g01991 | 1087 | CDD | FYVE_like_SF | 612 | 664 | - | - | |
| Accr8g01991 | 1087 | Pfam | Pleckstrin homology domain | 11 | 119 | IPR001849 | - | |
| Accr8g01991 | 1087 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 195 | 437 | - | - | |
| Accr8g01991 | 1087 | PRINTS | Chromosome condensation regulator RCC1 signature | 260 | 273 | IPR000408 | - | |
| Accr8g01991 | 1087 | PRINTS | Chromosome condensation regulator RCC1 signature | 329 | 345 | IPR000408 | - | |
| Accr8g01991 | 1087 | PRINTS | Chromosome condensation regulator RCC1 signature | 386 | 400 | IPR000408 | - | |
| Accr8g01991 | 1087 | PRINTS | Chromosome condensation regulator RCC1 signature | 279 | 295 | IPR000408 | - | |
| Accr8g01991 | 1087 | PRINTS | Chromosome condensation regulator RCC1 signature | 487 | 505 | IPR000408 | - | |
| Accr8g01991 | 1087 | PRINTS | Chromosome condensation regulator RCC1 signature | 370 | 386 | IPR000408 | - | |
| Accr8g01991 | 1087 | PRINTS | Chromosome condensation regulator RCC1 signature | 545 | 566 | IPR000408 | - | |
| Accr8g01991 | 1087 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 606 | 668 | IPR017455 | - | |
| Accr8g01991 | 1087 | SMART | fyve_4 | 600 | 669 | IPR000306 | GO:0046872 | |
| Accr8g01991 | 1087 | Gene3D | - | 444 | 614 | IPR009091 | - | |
| Accr8g01991 | 1087 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 550 | 601 | IPR000408 | - | |
| Accr8g01991 | 1087 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 498 | 549 | IPR000408 | - | |
| Accr8g01991 | 1087 | Pfam | Transcription factor BRX N-terminal domain | 857 | 888 | IPR027988 | - | |
| Accr8g01991 | 1087 | ProSiteProfiles | BRX domain profile. | 999 | 1054 | IPR013591 | - | |
| Accr8g01991 | 1087 | MobiDBLite | consensus disorder prediction | 907 | 1005 | - | - | |
| Accr8g01991 | 1087 | SUPERFAMILY | PH domain-like | 10 | 119 | - | - | |
| Accr8g01991 | 1087 | MobiDBLite | consensus disorder prediction | 933 | 949 | - | - | |
| Accr8g01991 | 1087 | MobiDBLite | consensus disorder prediction | 1053 | 1087 | - | - | |
| Accr8g01991 | 1087 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 551 | 598 | IPR000408 | - | |
| Accr8g01991 | 1087 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 328 | 379 | IPR000408 | - | |
| Accr8g01991 | 1087 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 448 | 494 | IPR000408 | - | |
| Accr8g01991 | 1087 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 277 | 325 | IPR000408 | - | |
| Accr8g01991 | 1087 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 383 | 432 | IPR000408 | - | |
| Accr8g01991 | 1087 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 498 | 546 | IPR000408 | - | |
| Accr8g01991 | 1087 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 277 | 328 | IPR000408 | - | |
| Accr8g01991 | 1087 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 422 | 432 | IPR000408 | - | |
| Accr8g01991 | 1087 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 329 | 383 | IPR000408 | - | |
| Accr8g01991 | 1087 | MobiDBLite | consensus disorder prediction | 1067 | 1087 | - | - | |
| Accr8g01991 | 1087 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 384 | 435 | IPR000408 | - | |
| Accr8g01991 | 1087 | SUPERFAMILY | RCC1/BLIP-II | 218 | 603 | IPR009091 | - | |
| Accr8g01991 | 1087 | MobiDBLite | consensus disorder prediction | 908 | 930 | - | - | |
| Accr8g01991 | 1087 | Coils | Coil | 803 | 851 | - | - | |
| Accr8g01991 | 1087 | MobiDBLite | consensus disorder prediction | 957 | 992 | - | - | |
| Accr8g01991 | 1087 | SUPERFAMILY | FYVE/PHD zinc finger | 602 | 669 | IPR011011 | - | |
| Accr8g01991 | 1087 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 615 | 673 | IPR013083 | - | |
| Accr8g01991 | 1087 | CDD | PH_PLC_plant-like | 10 | 120 | - | - | |
| Accr8g01991 | 1087 | MobiDBLite | consensus disorder prediction | 764 | 800 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr8g01991 | Accr-Chr8 | 43477284 | 43484086 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr8g01991 | 1004 | 1067 | Major Intrinsic Protein MIP | AT1G31880 | 40.625 | 5.36e-09 | 57.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr8g01991 | - | - | qsa:O6P43_021414 | 1445.64 |