Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01982 ATGGTGAGAGCTCCATGCTGTGACAAGATGGGACTGAAGAAGGGTCCTTGGACTCGTGAGGAAGACCAAATATTGGTCTCTTACATTAACAAACATGGCCATGGCAATTGGCGAGCCCTCCCTAAGCAAGCAGGTCTTTTAAGATGCGGCAAGAGTTGCAGACTGAGGTGGATCAATTATTTGAGGCCAGATATAAAGAGAGGAAACTTCACAGCCGAAGAAGAAGAAACCATCATTAAGCTTCATGACATGCTTGGCAGCAGGTGGTCAGCGATTGCGGCAAAGTTACCAGGAAGAACAGACAACGAGATCAAAAATGTCTGGCATACCCACTTGAAGAAGAGGCTTCAAAAAACAAATGATCAAGCTCATCAAGCCATTCTTAATTCAGGTTCCAAAACCAGAGGCTCCATTAATAATAATAAAGCTTCAATCAAACGATCTGTTTCAAATTCCAGCACTTTGACAAGTCAATCAGAAGCTACAAGTTTCATCACTTCATCCTCTACTTCTAGTGATTGTGGGCAGAGTGTGAAAGTTGATATTAAGCGTGAAGACATAGATTCATCTTCTCTTGATGAGTCTTATTGGTTGCCTCAGATTGATGAAAGCTTTTGGACAGAAGCAGCCATGGAGGATGATAATAATAGCAGCAGCACCATTAATAATATTCAGAATAATGATGGAATATTTCCAGTTTATCATCAATACCCATTTGACGATGGAATGGATTTCTGGTATGATGTGTTCAGATCAGGGGATTTTCCAGAGTTGACGTTCTGA 783 0.4125 MVRAPCCDKMGLKKGPWTREEDQILVSYINKHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTAEEEETIIKLHDMLGSRWSAIAAKLPGRTDNEIKNVWHTHLKKRLQKTNDQAHQAILNSGSKTRGSINNNKASIKRSVSNSSTLTSQSEATSFITSSSTSSDCGQSVKVDIKREDIDSSSLDESYWLPQIDESFWTEAAMEDDNNSSSTINNIQNNDGIFPVYHQYPFDDGMDFWYDVFRSGDFPELTF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01982 260 CDD SANT 69 112 IPR001005 -
Accr8g01982 260 Gene3D - 68 148 - -
Accr8g01982 260 CDD SANT 16 61 IPR001005 -
Accr8g01982 260 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 219 - -
Accr8g01982 260 FunFam MYB-related transcription factor 13 66 - -
Accr8g01982 260 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Accr8g01982 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Accr8g01982 260 SMART sant 13 63 IPR001005 -
Accr8g01982 260 SMART sant 66 114 IPR001005 -
Accr8g01982 260 Gene3D - 13 66 - -
Accr8g01982 260 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Accr8g01982 260 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Accr8g01982 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Accr8g01982 260 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Accr8g01982 260 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01982 Accr-Chr8 43406848 43408340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01982 1 258 MYB Transcription Factor Family AT2G31180 50.558 9.70e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr8g01982 Myb_DNA-binding 6.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01982 K09422 - gmx:100807569 288.115