Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01972 ATGGACTCTTCTTTCTCCATCTTCCACTCTTCCACCTCCGAATCCTCCTTCGATTCCTCCTTCGCCTCCTCCGATTCCTTCTTCTCCTGCAACTTCCCCACTTCTTACCTCCCCTTCAACGAGAATGACCCCGACGAGATGCTTCTCTACGGCATGATTTCCGAGGCCAACCACAATGATAGCCCCGACGAATCTTTCTCTTCCGTCAAGGAGGAGGAGGTCAGCTCCAACTCCTCTGTTTCCGCGGCCCCTGCCGCCCCCAAGGAGAAGAGCTACAGAGGCGTGCGGCGGCGCCCATGGGGGAAATTCGCGGCGGAGATAAGGGATTCCACCAGGCACGGCATAAGGGTGTGGCTGGGGACCTTCGATAGCGCAGAGGCGGCGGCTTTAGCCTACGATCAAGCCGCGTTTTCCATGAGGGGATCGGCGGCGATACTGAACTTCCCGGCGGAGAGGGTGAGGGAGTCGCTGAAAGAGATGAACTACGGATCGGAAGAAGGTTGCTCGCCTGTGGTGGCTCTGAAGAGAAAGCACTCGTTGAGAAGAAAAGTGAATAGTAACAAGAAGAAGAACAAGGCAGAGAGCAGAGACATGAGAATAGACAGTGTGGTGGTGCTGGAAGATCTGGGCTCAGATTACTTGGAACAACTCTTGATGACCTCGGAGAATCCTAGGCCTTCAGAATCTCATTGCCTCAATGTTCATTAA 708 0.5424 MDSSFSIFHSSTSESSFDSSFASSDSFFSCNFPTSYLPFNENDPDEMLLYGMISEANHNDSPDESFSSVKEEEVSSNSSVSAAPAAPKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSAAILNFPAERVRESLKEMNYGSEEGCSPVVALKRKHSLRRKVNSNKKKNKAESRDMRIDSVVVLEDLGSDYLEQLLMTSENPRPSESHCLNVH 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01972 235 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Accr8g01972 235 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Accr8g01972 235 ProSiteProfiles AP2/ERF domain profile. 91 149 IPR001471 GO:0003700|GO:0006355
Accr8g01972 235 PANTHER DNA-BINDING DOMAIN 54 221 IPR044808 GO:0003700|GO:0009873
Accr8g01972 235 FunFam Ethylene-responsive transcription factor 2 90 151 - -
Accr8g01972 235 SMART rav1_2 91 155 IPR001471 GO:0003700|GO:0006355
Accr8g01972 235 MobiDBLite consensus disorder prediction 1 23 - -
Accr8g01972 235 MobiDBLite consensus disorder prediction 53 93 - -
Accr8g01972 235 Gene3D AP2/ERF domain 90 150 IPR036955 GO:0003700|GO:0006355
Accr8g01972 235 Pfam AP2 domain 91 141 IPR001471 GO:0003700|GO:0006355
Accr8g01972 235 CDD AP2 90 150 IPR001471 GO:0003700|GO:0006355
Accr8g01972 235 SUPERFAMILY DNA-binding domain 91 150 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01972 Accr-Chr8 43120694 43121401 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01972 37 223 AP2-EREBP Transcription Factor Family AT3G23240 62.766 1.47e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr8g01972 AP2 8.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01972 K14516 - cave:132179340 243.432