Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01968 ATGGATCTTGTAGGAAGAAGATTCTTAATTTCTGGGTCACAACCACTTTCGCCATTATCAAGCCCAGTGAGCTCAATCCTTCACCCACATTCACATTCTGCGAACACCAGTTTCCCCATTATAGCTATCGCTATAATAGGAATACTAGCCACAGCTTTCTTGCTCGTTAGCTACTATATCTTCGTCATCAAATGCTGCCTCAATTGGCACCGCATAGATCTCCTTCGACGGTTCTCTCCGTCCCGACGGCGAGAAGAGCCGCCGATGACATACTCGCCGCAAGGCACAGAGCCTCGAGGACTCGACGAGGCGGTGATCCGACTAATCCCAGTCATCCATTACAAAACAGAGGAAAAAAGAGAAGCCGGAGAGCGAAGCTTCACGGAATGCTCTGTTTGCTTGAACGAGTTTCGCGAGAAGGAGAAGCTGAGGATTATACCGAATTGCGGCCATGTGTTTCACATAGATTGTATCGATGTTTGGCTTCAGAACAACGCCAATTGCCCACTTTGCAGAACCAGCATTTCTCTTTCAAGCAGATTCCAAATAGATCAGATTCTAAATCCCAGAACTCCCTCACAAGATCGACGCTTGCAAGGCGAAAATCTCACCGGCGGCGATGAAGATTTCGTCGTGATTGAACTGAGCACTAATGGCCGCAACAGAGACCAGAACTGGAACAGAACACTGGAAAGAGAATACCTAGCACGAGAGGTAAGTCCTTCGCCTATTAAGAAAAGACCCTGGAAGTTTCAGAAAGTGACGAGCATGGGAGATGAGTGCATCGATACAAGAGGTAAAGATGAGATTTTTTCAGTACAGCCGATAAGGAGGTCGTTTTCCATGGATTCTTCAGGGGATAGGCAGTTGTACATGGCAGTTCAAGAAGCTTTGAAGAAACAGAACAGGCAGGAAGTGAGTGAGGTATCATCGTCCTCCATGGAAGGTTGTAGTAGTAGTAATAGTGGTAAAGTAAAGAGGTCATTTTTTTCCTTCGGACATGGCAGTAGTAGATCCAGAAGTTCAGTCCTACCTGTTTCTATGGACCACTAA 1053 0.4634 MDLVGRRFLISGSQPLSPLSSPVSSILHPHSHSANTSFPIIAIAIIGILATAFLLVSYYIFVIKCCLNWHRIDLLRRFSPSRRREEPPMTYSPQGTEPRGLDEAVIRLIPVIHYKTEEKREAGERSFTECSVCLNEFREKEKLRIIPNCGHVFHIDCIDVWLQNNANCPLCRTSISLSSRFQIDQILNPRTPSQDRRLQGENLTGGDEDFVVIELSTNGRNRDQNWNRTLEREYLAREVSPSPIKKRPWKFQKVTSMGDECIDTRGKDEIFSVQPIRRSFSMDSSGDRQLYMAVQEALKKQNRQEVSEVSSSSMEGCSSSNSGKVKRSFFSFGHGSSRSRSSVLPVSMDH 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01968 350 PANTHER RING-H2 FINGER PROTEIN ATL16 20 346 IPR044600 GO:0016567|GO:0016740
Accr8g01968 350 FunFam E3 ubiquitin-protein ligase ATL6 90 178 - -
Accr8g01968 350 SMART ring_2 130 171 IPR001841 -
Accr8g01968 350 Pfam Ring finger domain 129 172 IPR001841 -
Accr8g01968 350 CDD RING-H2_EL5-like 129 172 - -
Accr8g01968 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 177 IPR013083 -
Accr8g01968 350 SUPERFAMILY RING/U-box 129 178 - -
Accr8g01968 350 MobiDBLite consensus disorder prediction 304 350 - -
Accr8g01968 350 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01968 Accr-Chr8 42989984 42991036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01968 27 349 C3H Transcription Factor Family AT1G04360 52.809 3.78e-110 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01968 - - gmx:100775286 391.349