Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01954 ATGGAGAGAAACAATCTGATGAACAGCAACAAGAACCAAACGGTGAAAGAATATTGGAACAGAAAATCTCAGATAAGCTGTTGTGGAGGAGGAGATGATTATATAAATAATGGATTTTCATGGCCTCCAAGATCATACACTTGTAGCTTCTGCAAGAGGGAATTCAGATCTGCTCAAGCCCTTGGTGGCCATATGAATGTTCATCGCAGGGACAGAGCCAGGCTCAGGCAGTCACCACCTCCAACTCCAACTCATGAAACTCATCACTCCACCATGCTCAACCTAAATCTTAACCCTACCTCTGGTCCTGACTTCTCAACCTCAACCATGTCTTTGTTACCATCTTCATCTTCTTCTACAATGCTCAAAAAACCATTCTCTGTGGTTTGTCCTACACTTGCTTCTTCGTCATCTTATGATCTGAAAAAATGGGTTGTGGACGGTATCGTGTTGAACTCTTCAAGCACCAAGGCCTCAGAGTCTACAAATATGAAGAATGCTACTAATGCACAAGAGGATGGTTGCAAAGCGGTTAAAAATGCTGACATCATTAGGTTGGACTTGCATATAGGTTTGCTTAGTGATTCCAAGGATGATTTAGATCTGGAGCTTCGATTGGGTACTTATGCTTAG 633 0.4234 MERNNLMNSNKNQTVKEYWNRKSQISCCGGGDDYINNGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRQSPPPTPTHETHHSTMLNLNLNPTSGPDFSTSTMSLLPSSSSSTMLKKPFSVVCPTLASSSSYDLKKWVVDGIVLNSSSTKASESTNMKNATNAQEDGCKAVKNADIIRLDLHIGLLSDSKDDLDLELRLGTYA 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01954 210 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
Accr8g01954 210 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Accr8g01954 210 Pfam C2H2-type zinc finger 46 70 - -
Accr8g01954 210 SUPERFAMILY beta-beta-alpha zinc fingers 43 72 IPR036236 -
Accr8g01954 210 PANTHER OS07G0101800 PROTEIN 21 208 - -
Accr8g01954 210 SMART c2h2final6 46 68 IPR013087 -
Accr8g01954 210 Gene3D Classic Zinc Finger 39 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01954 Accr-Chr8 42850599 42851231 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01954 1 207 C2H2 Transcription Factor Family AT3G23130 39.662 2.43e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr8g01954 zf-C2H2_6 3.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01954 - - qsu:112024893 169.088