Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01953 ATGAACAGTTCAGATAATTCGAGCGGGGAGGAGACTGATCAACTTGAAGATGGAGATTCAAGAGAAACAAGACGATCTTATGAGTGCACTTTTTGCAGAAGGGGCTTCACCAACGCTCAAGCGTTAGGGGGTCACATGAATATCCATAGGAAAGACAGAGCCAAAAACAAGGCCAAACAAATCACACCTCATAATAATTCTTCTTCTCTTTCAAACAGATTTTCCATTGAGGATTATTCCTTTGCTTCAGCCTCTCCTTTTCTTTCAGAAATATCTTCATCATCGGGCCAGCAATCCTCAAAGTTTTATTCCATTTTCGAGGTTCATCAGGGAAATAACTATAACATGTATTTCCCACCATCTTCTGCAACAACAAACCCTAGAAACTCTTCTCCTGCTTCATCATACGCCTTTCCCTTTGAGTATCTTAATCCAAGGTCTCATCAAAACCAAGAACTTCTTGGCGCCAATTTGAGTCTCCAGATTGGCCCACCAAGTCATGTGGAAAGTACTCAGAAAGATGGTGAAGTGGACTTAGAGCTCAGACTTGGCCACCATCCATATTGA 567 0.418 MNSSDNSSGEETDQLEDGDSRETRRSYECTFCRRGFTNAQALGGHMNIHRKDRAKNKAKQITPHNNSSSLSNRFSIEDYSFASASPFLSEISSSSGQQSSKFYSIFEVHQGNNYNMYFPPSSATTNPRNSSPASSYAFPFEYLNPRSHQNQELLGANLSLQIGPPSHVESTQKDGEVDLELRLGHHPY 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01953 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Accr8g01953 188 SUPERFAMILY beta-beta-alpha zinc fingers 24 53 IPR036236 -
Accr8g01953 188 Gene3D Classic Zinc Finger 5 81 - -
Accr8g01953 188 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Accr8g01953 188 PANTHER OS07G0101800 PROTEIN 3 186 - -
Accr8g01953 188 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01953 Accr-Chr8 42838193 42838759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01953 27 59 C2H2 Transcription Factor Family AT5G43540 87.879 2.39e-15 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr8g01953 None None None