Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01904 ATGGTGAAGCAGGTCTTCGATGAGCCCTCGGAACGAAGTGATTCTAAGTTCAGAGGGGTTCGTAAGAGGAAGTGGGGCAAGTGGGTTTCCGAAATTAGACTACCCAACAGCAGGGAGAGGATCTGGTTGGGATCTTATGACTCTGCCAAGAAGGCGGCGCGTGCCTTTGACGCCGCCATGTTTTGCTTACGTGGCCGCTCCGGTAACTTTAATTTTCCCGATAACCCGCCCGACATCCCCGGCGGGAGGTCTATGTCCCCGGCTCAGATTCAAGCTGCCGCGGCCCGTTTCGCCAATTCGGATCCTGGTACGGGTCAAACAGATAAGCCCGAGACCCGAGAATTGGCAGAGGAGTCTTCGTCTCGTTCGCTCTCGGAAGCGACGGTTATGCCCGTGGAGTCTCCGTCACCCTCGTTTTCCGAGGGGACGGTGCAAACGGACAGTGAAATGACACTAAACGAATCGGTCCCGGATCTTTTTAAGACAGTCGGATCAGGTAATTACGCGAATGAATACGGGATATTCGCGGGGTTTGATGATCTAACCAGTGGGTTCTACATACCAGAGATGCCAAGTGTGAATTACGAGGAAGAAAACATGGACGGCCTGATAATTGATGACTCATTCCTGTGGAATTTTTAA 642 0.5234 MVKQVFDEPSERSDSKFRGVRKRKWGKWVSEIRLPNSRERIWLGSYDSAKKAARAFDAAMFCLRGRSGNFNFPDNPPDIPGGRSMSPAQIQAAAARFANSDPGTGQTDKPETRELAEESSSRSLSEATVMPVESPSPSFSEGTVQTDSEMTLNESVPDLFKTVGSGNYANEYGIFAGFDDLTSGFYIPEMPSVNYEEENMDGLIIDDSFLWNF 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01904 213 Gene3D AP2/ERF domain 15 74 IPR036955 GO:0003700|GO:0006355
Accr8g01904 213 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Accr8g01904 213 MobiDBLite consensus disorder prediction 121 144 - -
Accr8g01904 213 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
Accr8g01904 213 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Accr8g01904 213 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Accr8g01904 213 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Accr8g01904 213 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Accr8g01904 213 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Accr8g01904 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 146 - -
Accr8g01904 213 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Accr8g01904 213 MobiDBLite consensus disorder prediction 95 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01904 Accr-Chr8 42048063 42048704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01904 15 213 AP2-EREBP Transcription Factor Family AT1G19210 49.524 3.10e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr8g01904 AP2 3.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01904 - - qsa:O6P43_022515 258.07