LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr8g01901	ATGGGGGCGAAAAGAAGCGCGAATTCAAGTGAAGCAGCTACGGGAAAGAAGATTAAGATGAAGGAGGCTGTGAACAATGAACGCAAAGACGGCACTATTTTTGCCTCTTGCTCTTTCTCAAGCCTGGGACTGCATCCTACCATATGCAACGAGCTCCTTGGAAGAATGGGTTTTGAAGTTCCAACCTCTGTACAAGCCCAAGCCATTCCTGTTATTCTCTCAGGGCGTCATGTTCTTGTTAATGCTGCCACGGGCACCGGGAAGACTGTGGCATACTTGGCTCCAATTATTCACCATTTGCAGAACTTTGATGGTAGAATCCAACGATCTGATGGAACATATGCGTTGGTTCTTGTGCCAACGCGGGAGCTATGTTTGCAGGTTTATGAAATTCTTCAAAAGTTATTGCATCGATTCCACTGGATTGTTCCTGGATATGTAATGGGTGGTGAAAATAGGTCAAAAGAAAAGGCCAGGTTGCGCAAAGGCATATCGATTCTTGTAGCAACTCCTGGGCGCCTTTTAGATCACTTGAAGAATACATCATCGTTCTTGTACACCAATTTGCGTTGGATAATCTTTGATGAAGCTGATAGGATTTTGGAATTAGGATTCGGAAAAGAAATAAAGGAAATACTAGATCATTTAGATTCTAAAACAGGTTGTGCTAACCAAGAGAATGCAGTTTCAAGGCACTCTCGAACTCTGAGACAGAATTTGCTCTTATCGGCTACTTTAAATGAAAAGGTGAATCATCTTGCTAAAATTAGTCTAGAGAATCCAGTGATGATTGGTATCAATTGCAAAGAGACAGAACCAATTTCGACGAACCTCAGTTCTTCAGAATCTGATGAGGAGAGTGAAGGCAATGAAACGAAGTATCCCAGCAACATGCTGCATACACCTGCTGGAGATTATAAAGTTCCCACACAATTGATTCAGAGATATGTTAAAGTACCTTGCGGCGACCGTCTTGCAGTTCTTCTTTCAATTTTGAAGTATCTTTCTGAAAGGGAAGCTTCACAAAAGATTGTGGTATTCTTTTCGACATGTGATGCAGTAGACTTTCACTTTTTACTGTTAAGTGAATTCCAGTTTTCTTATCCACAATCAGAAGCAGATGCTAGACAGATTTTTCTGGGGGGCAAAGTGTTTCGTTTGCATGGGAACATGGACCAGGAGGACCGGAGGAAGACTTTTCAGACGTTTAAAACAGAGAAATCAGCTCTGCTGTTTTCCACTGATGTAGCTGCTAGAGGACTGGATTTTCCGAAAGTCAGATGCATTATACAATATGATTCTCCAGGGGAAGCCACTGAATATGTGCATAGAGTTGGTAGAACTGCTCGGCTGGGTGAAAGAGGAGAGTCATTGTTATTTCTGCAGCCAGTTGAAATTGATTATTTACAGGACTTGGAAAAACACGGTGCATCACTAACAGAGTATCCTCTCCTCAAAGTGTTGGATAGTTTCCCACTTTATGGTCAAAAGAAGCACACCAAGAATTTTGTTGCCATAGAGTCACATCCCTGGGTCCTTTGTCTCCAGAAGGCACTTGAATCCTTCGTCACGTCTAAGCCCAAAATTGATAAACTTGCCAAGAGGGGATTTTGCTCTTGGGTCCGTGCCTACACAACCCATCGTGGTGAGTTGAAAAAGATATTTATGATCAAGAAACTCCACTTGGGGCATGTAGCAAAAAGCTTTGCACTTAAACAGCAACCTTCCTTAGTTGCGAAGTCATACAAGAAGCAAGCCAAGAGGAAGAGGTTTCAGAAGCCAATCGGGCTGGCTAAAAAGAGAAAGATCGCCGGGGTGACATAA	1824	0.426	MGAKRSANSSEAATGKKIKMKEAVNNERKDGTIFASCSFSSLGLHPTICNELLGRMGFEVPTSVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIHHLQNFDGRIQRSDGTYALVLVPTRELCLQVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKNTSSFLYTNLRWIIFDEADRILELGFGKEIKEILDHLDSKTGCANQENAVSRHSRTLRQNLLLSATLNEKVNHLAKISLENPVMIGINCKETEPISTNLSSSESDEESEGNETKYPSNMLHTPAGDYKVPTQLIQRYVKVPCGDRLAVLLSILKYLSEREASQKIVVFFSTCDAVDFHFLLLSEFQFSYPQSEADARQIFLGGKVFRLHGNMDQEDRRKTFQTFKTEKSALLFSTDVAARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGASLTEYPLLKVLDSFPLYGQKKHTKNFVAIESHPWVLCLQKALESFVTSKPKIDKLAKRGFCSWVRAYTTHRGELKKIFMIKKLHLGHVAKSFALKQQPSLVAKSYKKQAKRKRFQKPIGLAKKRKIAGVT	607

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr8g01901	607	Gene3D	-	321	601	IPR027417	-
	Accr8g01901	607	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	327	499	IPR001650	-
	Accr8g01901	607	PANTHER	RNA HELICASE	28	524	-	-
	Accr8g01901	607	Pfam	DEAD/DEAH box helicase	62	252	IPR011545	GO:0003676\|GO:0005524
	Accr8g01901	607	CDD	DEADc_DDX31	52	265	-	-
	Accr8g01901	607	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	193	201	IPR000629	-
	Accr8g01901	607	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	37	66	IPR014014	GO:0003724
	Accr8g01901	607	MobiDBLite	consensus disorder prediction	274	301	-	-
	Accr8g01901	607	Pfam	Domain of unknown function (DUF4217)	516	576	IPR025313	-
	Accr8g01901	607	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	75	483	IPR027417	-
	Accr8g01901	607	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	33	265	IPR027417	-
	Accr8g01901	607	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	69	264	IPR014001	-
	Accr8g01901	607	Pfam	Helicase conserved C-terminal domain	330	452	IPR001650	-
	Accr8g01901	607	CDD	SF2_C_DEAD	312	461	-	-
	Accr8g01901	607	Gene3D	-	2	267	IPR027417	-
	Accr8g01901	607	SMART	ultradead3	57	277	IPR014001	-
	Accr8g01901	607	SMART	helicmild6	370	452	IPR001650	-
	Accr8g01901	607	SMART	DUF4217_3	514	579	IPR025313	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr8g01901	Accr-Chr8	41980601	41984924	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr8g01901	27	484	Eukaryotic Initiation Factors Gene Family	AT3G19760	25.325	1.54e-31	125

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr8g01901	K14806		-	gmx:100805157	887.486