Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01883 ATGATGTTCAATGCTCAAGGTCCTTCAAAAAAATCTAGTCTCCTTGCCGTCCTCAGTGGAAATTCATTTGACAATAAGCAAAAGCTGAAACAGGATGATTTTAAGTATCAATCTCCATATCCCATTCCGGAGCTAACTTCATCCGGGCTTCTTGAGGTTAATGTTTTGATCAAACCAACTGCTGATGAACTTCATCGAGTTTTTGAAGCATTGGAGCCAAATTTTGTTTACTTGCAAGGCGAGCAGCTAGAAGATAGTGAACAAATTGGGTTCCTAGTATGGGAAGATGTTGATCTGTCAACCCCAGAAGCCTTATGTGGATTATTTTCCTCCAAATTACCTAATACCGTTTATTTGGAAACTCCTGAAGGAGAAAGTTTGGCAGAGGCTCTCCATTCTAAGGGAATTCCTTACACAATATATTGGAAAAGTGAATTTTCAAAGTATGCCGCTTCACATTTTCGTCAAGCTTTTTTCTCAGTGGCACAAAGTACCTTCAGCCACACATGGGACGCTTTCCAGCTTGCTCTTGCTTCTTTCAGATTATACTGTGTACAAAACAATGTTTCACCTTCAAACAAAATGAAGAGCAGAAGCAAGCTTGGGCCACAAATGTTTGGTGACCCTCCAAACATTGATACTGCCCCAGTTGAAGCAGGCATGAATGAGGAAGAAAACTCACCTGAGACTATTTCTGCCCTGAAGATTTATGATGATGATGTGAACATGAGATTTCTTATGTGTGGAGTTGCTTGCATGCTGGATACTTGCTTATTGGAATCATTGGAGGACGGACTTAATGCTATCCTGTGTACAGAAATACGAGGATGTAAACTTCACAACCGGACAAGTGCTCCACCACCTCCCCTTCAGGCAGGGACATTCTCACGTGGTGTGGTGACCATGCGTTGTGATATATCCACGTGTAGTTCTGCTCATATATCACTCTTGGTGTCTGGTAGTGCAGATACTTGCTTTAATGATCAGCTTTTGGAGACTTATATAAAAAAGGAGCTGATTGAGAAGAGTCAGCTAGTTCAGGCATCTACCAATTGTGAACAAAGCAACTTACCTTTTTCTGAGCCTCGAAGGTCAACTTCAATAGCTTGTGGGGCTAGTGTATTTGAAGTTTGCATGCAGGTTCCCACATGGGCTTCATTGGTTCTGAGACAGCTTGCACCAGAAGTGTCATACCGCAGCCTAGTTATGCTGGGAGTAGCCAGTGTTCAAGGATTGCCTGTTGCGTCATTTAAGAAAGTTGATGCTGAACGTCTCCTTTACTTTTGTTCAAGGCTGTCAGAAAAAAACTGCCTTAATGACCCCATTTCTTTTGGACATCCTAGTTGGCTGACACCTCCAGCGCCTACTAAAAAACGATCAGAGCCATTCTCTGGAATAAAGTCTGTCAATTCTACTAGCCTTCAAGTCAGTGGTAGTGGTAACAATAGACACAAATTAAACATTGCTGCAATGAGGCCAATCCCTCACTCACATTGTCAGAAGATTCGACCTTTCTCTGGATTGTCTGAGGGGGAAAGGCTTGATGGGGAACGTGGAAAATCAAATTTTCCAATGGCTCCAATAAAGCATAATGGTGTAGGCTCTAATTCAGTCACAAATAGGAAATCTTCATCAACTTCCTTTCAGGCTCAACAGATCGTTACATTAAATCCGCTACCCATGAAGAAGCATGGTTGTGAGAGAGCTCCCATACGGTCTTGTTCAGAGGAGGAATTCTTGAAGGATGTAATGCAGTTTCTTATCCTCCGTGGGCATTCTCGGCTAATTCCACAAGGCGGTCTTTCTGAATTCCCTGAAGCCGTTCTGAATGCTAAACGCCTTGATCTTTTTAACTTGTACAGAGAGGTGGTATCTAGAGGAGGGTTTAATGTTGGGAATGGAATCAACTGGAAAGGACAAGTTTTCTCAAAGATGCGGAATCACACTTTGACAAATAGAATGACAGGTGTTGGCAATACTCTTAAAAGACACTATGAGACTTATCTTCTAGAGTATGAACTGGCTCATGATGACATAGATGGAGAGTGCTGCTTGTTGTGCCGCAGTAGCGCAGCTGGCGATTGGGTGAATTGCGGGATATGCGGTGAGTGGGCCCACTTCGGCTGTGATAGGCGTCAAGGACTTGGTGCATTTAAGGACTATGCTAAAACGGATGGGCTAGAGTACATTTGCCCACATTGCAGCATCTCAAATTTCAGAAAGAAATCTCAGAAAACTTCAAACGGATATTAA 2253 0.4274 MMFNAQGPSKKSSLLAVLSGNSFDNKQKLKQDDFKYQSPYPIPELTSSGLLEVNVLIKPTADELHRVFEALEPNFVYLQGEQLEDSEQIGFLVWEDVDLSTPEALCGLFSSKLPNTVYLETPEGESLAEALHSKGIPYTIYWKSEFSKYAASHFRQAFFSVAQSTFSHTWDAFQLALASFRLYCVQNNVSPSNKMKSRSKLGPQMFGDPPNIDTAPVEAGMNEEENSPETISALKIYDDDVNMRFLMCGVACMLDTCLLESLEDGLNAILCTEIRGCKLHNRTSAPPPPLQAGTFSRGVVTMRCDISTCSSAHISLLVSGSADTCFNDQLLETYIKKELIEKSQLVQASTNCEQSNLPFSEPRRSTSIACGASVFEVCMQVPTWASLVLRQLAPEVSYRSLVMLGVASVQGLPVASFKKVDAERLLYFCSRLSEKNCLNDPISFGHPSWLTPPAPTKKRSEPFSGIKSVNSTSLQVSGSGNNRHKLNIAAMRPIPHSHCQKIRPFSGLSEGERLDGERGKSNFPMAPIKHNGVGSNSVTNRKSSSTSFQAQQIVTLNPLPMKKHGCERAPIRSCSEEEFLKDVMQFLILRGHSRLIPQGGLSEFPEAVLNAKRLDLFNLYREVVSRGGFNVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDIDGECCLLCRSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSISNFRKKSQKTSNGY 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01883 750 SUPERFAMILY ARID-like 574 687 IPR036431 GO:0003677
Accr8g01883 750 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 750 IPR042293 -
Accr8g01883 750 SUPERFAMILY FYVE/PHD zinc finger 669 737 IPR011011 -
Accr8g01883 750 CDD PHD_ARID4_like 683 734 - -
Accr8g01883 750 Gene3D - 563 678 IPR036431 GO:0003677
Accr8g01883 750 CDD ARID 575 673 - -
Accr8g01883 750 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 679 735 IPR013083 -
Accr8g01883 750 MobiDBLite consensus disorder prediction 532 549 - -
Accr8g01883 750 ProSiteProfiles ARID domain profile. 573 677 IPR001606 GO:0003677
Accr8g01883 750 Pfam ARID/BRIGHT DNA binding domain 576 673 IPR001606 GO:0003677
Accr8g01883 750 SMART ARID_2 570 673 - -
Accr8g01883 750 MobiDBLite consensus disorder prediction 520 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01883 Accr-Chr8 41723619 41730132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01883 2 749 ARID Transcription Factor Family AT3G43240 63.564 0.0 953
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Accr8g01883 ARID 4.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01883 - - gmx:100775894 1187.56