Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01880 ATGGCGTTTCAAGACTTCGATCTAATCACTGAGAAAAGAAAAACTGACAAGAAACAAAAACTCAAACGCAAAATCGCCATCGGCGCAGTTTGCACCATCGTCGTTATTGGTCTCATCGGAGCCGCCGCTTTCGTAGTGGTCACCAAATACAGTGAAGAAGACAAGGAATTCAATAACCACAACAAAAAATCCCCACCTTCCTCTTCCTCCTCCTCCTCAAAGAGTAACCCTGATGCCAACCAGGTTTCTGCTATTTCAGAGAAACTTGTGAAGACCATCTGCGGTTACACCGATTACCAGGAAAAATGCGAGACAAGTCTGAAGGAGGAAGTGAAAAAGAATGCAAAAATATCGCAACCCAAAGATGTCCTTCAAGTTGCTATCTCCGTCGCCCAGGATGAGGTCAATAAGGCCATGAACAAATCCAGCAACTTCAACTTTGAAACCGACCAAGAGAAAGGTGCTTTCGAGGATTGCAAGAAGCTTCTAGAAGCCGCGAAGAACGATCTAGGGAATTCATCTTCACATGTTGCGTCACTCGACATGGCCAAGCTGAAGTCATCCTCCTCGGATTTGAACAGTTGGCTCAGTGCTGTTATTTCTTTCCAGGGCGCTTGTCTTGATGGGTTTTCTGAAGGAAAATTGAAGACGGAATTGGAGAGTGCGTTTAGGAATTCAACGGAGTATGTTAGCAATTCTCTTGCCATTTTATCGCAGTTAGGCTCTGCTTTTTCATCGGCACTATTGAACGGTGGTGCCAGTCGTCACTTGCTTTCGTCGTCCGACGATAAGGGTCTTCCAGAGTGGATGAAAGATGAAGATCGGAGAATGTTGAAGGCAGCTGATGATAAACCCACACCTAACGTCACCGTATCTAGCGATGGCAGTGGCGACTTCAAAACCATCTCCGAAGCTCTAAAAGCCATACCACAGAAATACGATGGACGGTACGTGGTTTATGTTAAAGCAGGAACTTATGATGAGACTGTAGTAATAGAATCGAGAATGGTAAACCTTACCCTTTATGGCGATGGATCACAAAAAAGCATTATCACCGGCAACAAGAATTTCGTTGATGGAGTAAGGACTTACCATACTGCATCATTTGCTGTAGAAGCAGATGGGTTTTTAGGGAAGGCAATGGGATTCAGAAACACAGCAGGCCCAGAGAAGCACCAAGCCGTAGCCGCAAGAATCCAAGGAGATCGTTCGGTGTTCGTGAACTGTCGTTTTGAAGGGTACCAAGACACACTTTACGCCCTAGCACACAGGCAATTCTACCGGAGCTGCGTAATCTCTGGCACGGTGGACTTCATCTTCGGCGACGCGGCCGCAATATTCCAGAACTGCATAATAAACATTAGGAAACCCATGGACAATCAGCAGAACATAGTGACAGCCCAAGGCAGAATGGACCCACGACAACAAACCGCCATTGTTCTGCAAAACTGTCAGATCAAGGCAGACACCTCACTCGCCTCCGTGAAAGACAAGTTCAAGAACTACCTTGGGAGGCCATGGAAGGAGAACTCAAGAACAATCATCATGGAGTCACAGATCGATGGCATCATCGACCCTGAAGGGTGGATGCAATGGGAAGGCGAATTTGCACTTAAGACGTTGTTCTATGCTGAGTACAACAATACTGGACCAGGTGCTAATACTGATAATAGGGTGAAGTGGCCTGGCTACAAGAAAATCACTAGGGACGAGGCAAGCAGCTTCACCGTCGGAACTTTCTTAGCGGGTAATTGGATCTCCGTGATCAACGTGCCGGTTCAGCGAGGGTTATATAACTGA 1800 0.465 MAFQDFDLITEKRKTDKKQKLKRKIAIGAVCTIVVIGLIGAAAFVVVTKYSEEDKEFNNHNKKSPPSSSSSSSKSNPDANQVSAISEKLVKTICGYTDYQEKCETSLKEEVKKNAKISQPKDVLQVAISVAQDEVNKAMNKSSNFNFETDQEKGAFEDCKKLLEAAKNDLGNSSSHVASLDMAKLKSSSSDLNSWLSAVISFQGACLDGFSEGKLKTELESAFRNSTEYVSNSLAILSQLGSAFSSALLNGGASRHLLSSSDDKGLPEWMKDEDRRMLKAADDKPTPNVTVSSDGSGDFKTISEALKAIPQKYDGRYVVYVKAGTYDETVVIESRMVNLTLYGDGSQKSIITGNKNFVDGVRTYHTASFAVEADGFLGKAMGFRNTAGPEKHQAVAARIQGDRSVFVNCRFEGYQDTLYALAHRQFYRSCVISGTVDFIFGDAAAIFQNCIINIRKPMDNQQNIVTAQGRMDPRQQTAIVLQNCQIKADTSLASVKDKFKNYLGRPWKENSRTIIMESQIDGIIDPEGWMQWEGEFALKTLFYAEYNNTGPGANTDNRVKWPGYKKITRDEASSFTVGTFLAGNWISVINVPVQRGLYN 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01880 599 PANTHER PECTINESTERASE 44 587 - -
Accr8g01880 599 FunFam Pectinesterase 86 241 - -
Accr8g01880 599 FunFam Pectinesterase 282 597 - -
Accr8g01880 599 Gene3D - 282 597 IPR012334 -
Accr8g01880 599 Pfam Plant invertase/pectin methylesterase inhibitor 89 236 IPR006501 GO:0004857
Accr8g01880 599 MobiDBLite consensus disorder prediction 62 81 - -
Accr8g01880 599 NCBIfam pectinesterase inhibitor domain 77 240 IPR006501 GO:0004857
Accr8g01880 599 MobiDBLite consensus disorder prediction 55 81 - -
Accr8g01880 599 ProSitePatterns Pectinesterase signature 2. 432 441 IPR033131 -
Accr8g01880 599 SUPERFAMILY Pectin lyase-like 286 586 IPR011050 -
Accr8g01880 599 SMART PMEI_2 85 236 IPR006501 GO:0004857
Accr8g01880 599 Gene3D Invertase/pectin methylesterase inhibitor family protein 85 242 IPR035513 -
Accr8g01880 599 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 88 240 IPR035513 -
Accr8g01880 599 Pfam Pectinesterase 288 584 IPR000070 GO:0030599|GO:0042545
Accr8g01880 599 CDD PMEI-like_3 92 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01880 Accr-Chr8 41689861 41692304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01880 1 599 Carbohydrate Esterase AT2G26450 47.581 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01880 - - gmx:100784679 732.25