Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01879 ATGGCTTCCTCGACCCTCAAACTCTTCCTCCTTCTCTTCCCAATCTTCCTCTCACAAACTTTCGCTTCTCCCACAACAACACTTCACCCAAATCTCACTTCCATATGGTCTTTCTGCAGAACCAGGCCATACCCAGAAGCTTGCTTCCATTCTTTAAAGCTCGGCATTTCCATCAACATAAGCCCAAATATCCTCACCTACCTCCTTCGGTCTCTGCAAACCGCGATCTCCAAAGCCACCCACCTCTCCGATCTCTTCCACGATGCAGGCGGCGGCGGTTCTTCAAACCTCGTCGAGAAGCAGAGAGGTTCTATTCAAGACTGTAGAGAGCTTCATCTCTCAACATTGTCTTCCCTGAAAAGATCACTCTCTGGTGTTCGTGATTCTCCCACTTCTTCCAGAAAGCTCGCCAATGCCAGAGCCTACCTCAGCGCCGCCATGACCAACAAGAACACTTGCTTGGAAGGTCTCGACTCTGCTACGGGCTCCCTCAAGCCTCTTCTCGTGGACTCCACCATCGAAACTTACAAACACGTCAGTAACTCACTCTCCATGCTCCCCAAACCAGGAGGTTCCAGAGGCCATAAGAACAGGCGTCGGCGTTTACTGGGAGCTCCGGTGTGGCTGAAGAAGAGAGACCATCGGATCTTGGACGGGGAAGAATACGATCCCGATAAAATGCTTGTGGTGGCGGCGGATGGAAGTGGGAAGTTCAGCACCATTACTGAAGCAGTGAACTTTGCTCCCAATAATAGCTTGTACAGGACAGTGATATATGTGAAAGAAGGGGTTTATGAGGAAAATGTGGAGATCCCAAGTTACAAGACCAACGTTGTTCTGCTCGGAGATGGAAGCGATGTCACTCTCATTACTGGTGACAGAAGCGTGGGCGGTGGCTGGACCACCTTCAGATCTGCAACTCTAGCTGTATCCGGTGATGGGTTTCTGGCACGAGACATAGCGATAGAGAACAGAGCAGGGCCTGAGAAGCACCAAGCAGTAGCGTTAAGAGTAAACGCAGACTTAACGGCGCTATACAGATGCGCCGTTTATGGCTACCAAGACACTCTCTACGTCCATTCCTTCCGTCAGTTCTACAGAGAATGCAACATCTACGGCACCGTGGACTTCATTTTCGGGAACGCCGCCGTCGTTTTCCAAGGCTGCGACGTCGTTTCGAGGAAGCCAATGCCTCACCAGTTCACCGTCATCACTGCTCAAGCCCGAGACTCACCGGACGAGGATACTGGAATCTCGTTCCAGAATTGCACCGTCACAGCCACCCAAGATCTGTATAGTAGCTCTGGCAGCTTCAAGAGCTACCTGGGACGCCCATGGAAGCCATATTCTCGGACTGTGTACCTTGAATCTTACATTGATGACTTCGTGGATCCTGAGGGATGGACGGACTGGTCTGATTCTAATGGAGATGATTTGGAGACTTTGTACTATGGAGAATACCAGAATTTCGGTCCGGGTTCGGGTACCGGTGGTAGGGTGAATTGGGCCGGGTACCATGTGATGGGGTATGGGGATGCATATAAGTTTACGGTTTCTCAGTTCATTATGGGTGATGCTTGGCTTCAGTCCACTTCATTCCCTTATGATGCGGGCATTTGA 1620 0.5074 MASSTLKLFLLLFPIFLSQTFASPTTTLHPNLTSIWSFCRTRPYPEACFHSLKLGISINISPNILTYLLRSLQTAISKATHLSDLFHDAGGGGSSNLVEKQRGSIQDCRELHLSTLSSLKRSLSGVRDSPTSSRKLANARAYLSAAMTNKNTCLEGLDSATGSLKPLLVDSTIETYKHVSNSLSMLPKPGGSRGHKNRRRRLLGAPVWLKKRDHRILDGEEYDPDKMLVVAADGSGKFSTITEAVNFAPNNSLYRTVIYVKEGVYEENVEIPSYKTNVVLLGDGSDVTLITGDRSVGGGWTTFRSATLAVSGDGFLARDIAIENRAGPEKHQAVALRVNADLTALYRCAVYGYQDTLYVHSFRQFYRECNIYGTVDFIFGNAAVVFQGCDVVSRKPMPHQFTVITAQARDSPDEDTGISFQNCTVTATQDLYSSSGSFKSYLGRPWKPYSRTVYLESYIDDFVDPEGWTDWSDSNGDDLETLYYGEYQNFGPGSGTGGRVNWAGYHVMGYGDAYKFTVSQFIMGDAWLQSTSFPYDAGI 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01879 539 SUPERFAMILY Pectin lyase-like 225 537 IPR011050 -
Accr8g01879 539 NCBIfam pectinesterase inhibitor domain 7 186 IPR006501 GO:0004857
Accr8g01879 539 Gene3D - 223 539 IPR012334 -
Accr8g01879 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 188 IPR035513 -
Accr8g01879 539 PANTHER PECTINESTERASE 16 529 - -
Accr8g01879 539 Pfam Pectinesterase 228 525 IPR000070 GO:0030599|GO:0042545
Accr8g01879 539 CDD PMEI-like_3 37 191 - -
Accr8g01879 539 SMART PMEI_2 30 185 IPR006501 GO:0004857
Accr8g01879 539 ProSitePatterns Pectinesterase signature 2. 371 380 IPR033131 -
Accr8g01879 539 FunFam Pectinesterase 31 188 - -
Accr8g01879 539 Pfam Plant invertase/pectin methylesterase inhibitor 35 185 IPR006501 GO:0004857
Accr8g01879 539 FunFam Pectinesterase 222 539 - -
Accr8g01879 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 186 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01879 Accr-Chr8 41682332 41684487 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01879 27 539 Carbohydrate Esterase AT2G26440 66.730 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01879 - - gmx:100776969 785.408