Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01878 ATGGCCCTTTCTTCTTCAACCAAAACGATGCCTGCAAAACCCACCATCTCGTTTATTTTCGTGGTTATTCTGATTCTGGGCTTGTTGATCCCTATTAGTAATGCTGGTGGCAGTGATGTTAAGCGGTTAGAGTGCTTGAAAGTTTCATCTTCAGATTTCAGAGACTCCGTTCATGGAGTCATTGATGTTTTGCAACATGTTTCCTCCATCATGTCCACGCTTCCCATTGGACGAGATTTTCGTCTCTCCAATGCCATTTTTGACTGCCTCGACTTGCTCGATTTGTCTTTTGATGATCTCCAGTTGTCTTCCTCTGCCACTGAGACTCCCTCAGGCAAGAAAAACGGTACCGGGAACTTGAACTCTGATCTGAGAACATGGCTGAGTGCTGCACTAGCAAATCCACAGACATGCATGGAAGGGTTGGATGGTACCAAAAGCATGGTAGATAATCTTGTATCAGGTCTTATGAGTCAAATGATTTCATCGATCCAGCAGCTCTTAACTCAGGTTCACCATGAACCGGACGAGTTACTGACGAGCAAGGTACAGTTCCCTTCATGGATCAAACCAAGGGACCAGAAGCTCCTAGAATCAAATAAGATTAATGCAGATATTATAGTAGCAGCAGATGGAACTGGGACGTTCACTAGTGTATCAGATGCAGTGGAAGCAGCTCCTAATTATAGCATGAAACGTTTTGTGATATATGTAAAGAGGGGTCTGTACAAAGAGAGTGTGGATATCAAGAAGAAGAAGTGGAACATCATGATGATTGGTGAAGGCATGGACGCCACTGTTATCTCCGGTAACCGGAATTTCATTGACGGTTGGACCACATACCGATCGGCTACTTTCGCCGTTAGTGGGAGAGGATTCATAGCACGAGACATTACCTTCCAGAACACGGCAGGTCCACAAAAGCACCAAGCAGTGGCACTAAGATCAGACTCAGACCTCTCAGTCTTCTACCGCTGCGGCATCTACGGCTACCAAGACAGCCTCTTCACACACACAATGCGACAATTCTACAGAGAATGTACAATAAAAGGCACAGTGGATTTCATCTTCGGAGACGCCACAGCAGTGTTCCAAAAGTGCCTAATCCTCGCCAGAAAAGGCCTTCCAGATCAGAAAAACACAGTCACAGCACAAGGAAGAAAAGACCCACATGAACCAACCGGATTCTCCTTCCAATTCTGCAAAATCTCTGCAGATTCAGACCTTCTTCCTTTTGTTGGATCCACTGAAACATACCTGGGAAGGCCCTGGCGGGCATTTTCTCGAACCGTTTATATGCAATCGTACATGGGCTACTTGGTGGACCCACGAGGATGGCTTGAATGGAACGGAGATGAATCTTCGTTGGACACAGTTTTTTATGCAGAGTATATGAATGGTGGTCCTGGGGCTGCTTTGGAGAAGCGAGTGAAATGGCCTGGGTTTTATGTGTTGAAGGATGCGACGCAGGCTTATCAATTCACTGTCGCTGATTTTATTCAAGGTAATTTATGGCTGCCTCACACTGGTGTGATGTACACATCTGGTTTAAGCGCTTGA 1560 0.4577 MALSSSTKTMPAKPTISFIFVVILILGLLIPISNAGGSDVKRLECLKVSSSDFRDSVHGVIDVLQHVSSIMSTLPIGRDFRLSNAIFDCLDLLDLSFDDLQLSSSATETPSGKKNGTGNLNSDLRTWLSAALANPQTCMEGLDGTKSMVDNLVSGLMSQMISSIQQLLTQVHHEPDELLTSKVQFPSWIKPRDQKLLESNKINADIIVAADGTGTFTSVSDAVEAAPNYSMKRFVIYVKRGLYKESVDIKKKKWNIMMIGEGMDATVISGNRNFIDGWTTYRSATFAVSGRGFIARDITFQNTAGPQKHQAVALRSDSDLSVFYRCGIYGYQDSLFTHTMRQFYRECTIKGTVDFIFGDATAVFQKCLILARKGLPDQKNTVTAQGRKDPHEPTGFSFQFCKISADSDLLPFVGSTETYLGRPWRAFSRTVYMQSYMGYLVDPRGWLEWNGDESSLDTVFYAEYMNGGPGAALEKRVKWPGFYVLKDATQAYQFTVADFIQGNLWLPHTGVMYTSGLSA 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01878 519 FunFam Pectinesterase 199 517 - -
Accr8g01878 519 SMART PMEI_2 35 167 IPR006501 GO:0004857
Accr8g01878 519 Gene3D - 199 517 IPR012334 -
Accr8g01878 519 SUPERFAMILY Pectin lyase-like 203 516 IPR011050 -
Accr8g01878 519 Pfam Pectinesterase 205 503 IPR000070 GO:0030599|GO:0042545
Accr8g01878 519 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 171 IPR035513 -
Accr8g01878 519 PANTHER PECTINESTERASE 56 507 - -
Accr8g01878 519 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Accr8g01878 519 Pfam Plant invertase/pectin methylesterase inhibitor 65 163 IPR006501 GO:0004857
Accr8g01878 519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 157 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01878 Accr-Chr8 41670563 41673488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01878 17 517 Carbohydrate Esterase AT3G43270 56.178 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01878 K01051 - qsa:O6P43_003777 650.973