Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01858 ATGGAACTAGACGACTGGGACCTGAGCGCAGAGGATCTTGATTCTCTCGAAAAAGACGCTTTCCAAAAGATTGCTCAACTACGCAACTCCTCTTGCTCTGCGTCCACTTCTTCTTCCAACACTCAACAATTAAATGTACATCAACAACAATATGCAAAACCTTGGGGCAACGACTTGGAACGATCCCCTGCAAAACCCATTTCTGATTCTCGTCATGAAAGAGTTGAAGCTTTGTCTCCGCAGTCTAGAGCATTACCCTCGTCATTAAAATCAGGAACAAACAACGATGGTCATTCAAAAGAAATGCCAAAGGTTTCTGTCAAACTGTTTCTTCATTCCAGCGGAGACATTGCAGCAAAGTTTCAATACAACCAGACAGTAATATCTGCTATAAGGAGAGTCCCCAAATCTACTTGGAACGCAAAAGAAAGGTTATGGATGTTCCCACTATCTTCCTTGTCAGCAGCAGAAAAGGTTCTTGCTGAAACTTATAATGTTCAGCTTGAAAACCTAGATTTTCTAGTGCATCGGGCCATTGCTGCTGCATCTGCTGTTCCTGATCTTCGAGATCGGTATGACAAGATTCCTAGCTACATTGAATCAAAACTGTTGCCATTTCAGCAAGAAGGGATTAGGTTTATATTGCAGCATGGTGGGCGGGCTCTTTTAGCTGATGAAATGGGACTAGGGAAAACTTTGCAGGCCATTGCTGTAACTTCATGCATTTCTGAGTCATGGCCTGTGCTCATACTCGCACCATCTTCATTACGGTTGCAATGGGCTTCTATGATTCAACAATGGCTGGATATTCCTTCATCAGATATACTTGTTGTGCTATCTCAAAGTGGTGGATCAAATAAAGGAGGCTTCACTATAGTATCTTCTAATACAAAAAGCAGCATCCATCTAGATGGAGTGTTCAACATCATCTCGTATGATTTGGTTCCAAAGCTACAGAACATGCTTATGGCATCTGACTTTAAGGTTGTGATTGCAGATGAGTCACACTTTCTGAAAAATGCTCAAGCAAAGAGAACTACTGCTTCTCTTCCGGTTATAAAGAAAGCTCAATATGCAATATTGCTTAGTGGAACTCCTGCTTTGTCCCGACCAATTGAACTATTCAAGCAGCTGGAAGCACTATATCCTGATGTTTATAGAAACGTCCATGAATATGGTAACAGATACTGCAAGGGTGGATTATTTGGACAATACCAAGGTGCAAGTAACCATGAAGAATTGCACAATTTGATTAAGGCAACAGTGATGATTAGAAGGCTTAAAAAGGACGTTCTTTCTCAACTTCCTGTAAAGCGCAGGCAACAGGTCTTCCTAGATTTGGATGCCAAGGATATGAAGCAAATCAATGCTTTATTTCGGGAGTTGGAGGTTGTTAAAGCCAAAATTAAGGCAGCCAAATCAAAGGATGAGGCTGAAACGCTTAAGTTTACTCAAAAGAATCTTATTAACAAGATATATACTGAATCTGCTGAAGCCAAGATCCCAGCAGTTCTTGATTATATTGGAACTGTTATTGAGGCAGGTTGCAAGTTTCTGATATTTGCACATCATCAGCCAATGGTAGATTCAATACATGATTTTCTAATTAAAAAGAAGGTGGGTTGCATCCGCATTGATGGCAACACGGCCCCTGCATCAAGACAGGCATTGGTTACAGATTTTCAGGAAAAGGATTGTATCAAGGCAGCTGTGCTATCTATCAAAGCTGGCGGAGTTGGGTTAACTTTAACTGCTGCAAGCACTGTCGTTTTTGCAGAACTGTCCTGGACCCCAGGTGACCTAATTCAAGCGGAAGATCGTGCTCATAGAATTGGCCAGGTATCTTCAGTGAACATATACTACTTGCTAGCGAATGACACAGTCGATGATATCATATGGGATGTAGTGCAGAGCAAATTGGAAAATTTGGGACAGATGTTAGATGGCCATGAGAACATCATGGAGGTTGCAGCCAATCAGCCAGGGAGTAGCCCTGCAAAGCAGCAAACTCTTGACTGCTTTGTGAAAAGATGTAATAACATGGAGGAGCCGGAACAACAGCCCGACTCGAAACGCCCCCGATACTGA 2088 0.4215 MELDDWDLSAEDLDSLEKDAFQKIAQLRNSSCSASTSSSNTQQLNVHQQQYAKPWGNDLERSPAKPISDSRHERVEALSPQSRALPSSLKSGTNNDGHSKEMPKVSVKLFLHSSGDIAAKFQYNQTVISAIRRVPKSTWNAKERLWMFPLSSLSAAEKVLAETYNVQLENLDFLVHRAIAAASAVPDLRDRYDKIPSYIESKLLPFQQEGIRFILQHGGRALLADEMGLGKTLQAIAVTSCISESWPVLILAPSSLRLQWASMIQQWLDIPSSDILVVLSQSGGSNKGGFTIVSSNTKSSIHLDGVFNIISYDLVPKLQNMLMASDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVYRNVHEYGNRYCKGGLFGQYQGASNHEELHNLIKATVMIRRLKKDVLSQLPVKRRQQVFLDLDAKDMKQINALFRELEVVKAKIKAAKSKDEAETLKFTQKNLINKIYTESAEAKIPAVLDYIGTVIEAGCKFLIFAHHQPMVDSIHDFLIKKKVGCIRIDGNTAPASRQALVTDFQEKDCIKAAVLSIKAGGVGLTLTAASTVVFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENIMEVAANQPGSSPAKQQTLDCFVKRCNNMEEPEQQPDSKRPRY 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01858 695 Coils Coil 455 475 - -
Accr8g01858 695 FunFam Chromatin remodeling factor18 176 450 - -
Accr8g01858 695 SMART helicmild6 529 612 IPR001650 -
Accr8g01858 695 MobiDBLite consensus disorder prediction 81 100 - -
Accr8g01858 695 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 384 IPR014001 -
Accr8g01858 695 FunFam Chromatin remodeling factor18 461 691 - -
Accr8g01858 695 CDD DEXHc_HARP_SMARCAL1 203 426 - -
Accr8g01858 695 ProSiteProfiles HARP domain profile. 101 172 IPR010003 -
Accr8g01858 695 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 426 IPR027417 -
Accr8g01858 695 CDD SF2_C_SNF 499 623 - -
Accr8g01858 695 Gene3D - 178 432 IPR038718 -
Accr8g01858 695 SMART ultradead3 199 392 IPR014001 -
Accr8g01858 695 MobiDBLite consensus disorder prediction 28 52 - -
Accr8g01858 695 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 504 651 IPR001650 -
Accr8g01858 695 Pfam SNF2-related domain 221 483 IPR000330 GO:0005524|GO:0140658
Accr8g01858 695 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 687 - -
Accr8g01858 695 Pfam Helicase conserved C-terminal domain 508 612 IPR001650 -
Accr8g01858 695 MobiDBLite consensus disorder prediction 64 78 - -
Accr8g01858 695 Gene3D - 465 691 IPR027417 -
Accr8g01858 695 MobiDBLite consensus disorder prediction 28 101 - -
Accr8g01858 695 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 655 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01858 Accr-Chr8 41434630 41445810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01858 502 652 RAD5 or RAD16-like Gene Family AT1G11100 33.775 9.88e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr8g01858 SNF2_N 1.5e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01858 K14440 - gmx:100797654 1080.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g01858 8 41434630 41445810 Accr8g01858 8 41434630 41445810 ECH