Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01818 ATGGAGGCTAAATTTCGGGGGAAGAATCAGTATGTCTATGGACCTGTGGTGCCGGAAATGAAAGCGGTTGGAAAGAAGAGTTTGGAGTGGAATTTGGAAGACTGGAAATGGGACGGAGATCTTTTCACTGCTAGTCCACTAAATTCAGTTCCATCTGATTGTAGAAATAGGCAGTCTTTCCCAGTTGATTCTGAAATTCCTGCGAAAGCTAATACTTCTAACATTTTATCTTCTAATTGGGATGACGTCAACCCAGAGAAAGGAAAGAGAGAATTGGAAAAAAGGAGGAGAGCTGTTATATCTGAAGGTGATGAGCTGAATGATGAAGCTGGTTGTCTTAATTTAAACCTTGGGGCTCAAATTTACCCTATCATGGAAGGGGATGAAAAAAGTGGAAAGAAGACAAAGATAGTTGGGAGTGGGACTACTTCAAACCGAGCGGTTTGTCAGGTGGAAGATTGTAGGGCCGATCTTAGTAATGCAAAAGATTACCACCGCCGGCATAAGGTTTGTGATGTGCATTCCAAGGCCAGCAAAGCACTGGTAGGAAATGCTATGCAGCGTTTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAGGGGAAAAGAAGTTGTCGGAGGCGTTTGGCAGGCCACAATAGGAGGAGGAGGAAGACACACCCTGACGCTGTTGTTAATGGAGGCTCCCTGAGTGATGAAAGGGGCAGCAGCTATCTGTTAACAAGTCTTCTCCGTATACTGTCCAATATGCACTTTGCAGCAAATGGCTCAGATGCTACTAAGGACCAAGATATTCTCTCTCATCTGCTAAGGAATCTGGCAAGTCTGGCTGGTACAATCAATGGAACGAACATAGCCTCCTTATTGGAGGGATCCCAAGGTTTGGTGAATGCTGGGACATCTGGAACTTCCCAAAAAGTGCCTAATCTAAATTCAAATGGCCCTGAACCCATCAGTTCACCTGGTTCTTCCATCAGGACAGATAATGGTCTGAGCCATCAGAACCCTCCAAAGCCTCTGGGACAGTCTGAGACAGTGCCTGCATATGATATGGCGCAAAAATGTTTACCTTCAAGTGATATTGGGGTTGGAAGTTTAAAATCTCCTTCAGGATTACAGCCTTCAAATGCTGTTCTGACAAGGGATGGCCTTCCACCCCAATCAGTTGCAGCTGAGACTACAGTTAGAAGGAACGGTTTAAATCGCATTGACCTCAATAATGTATATGATGACATACAAGATGATGCTGAGAATCTTAGGAAGTCTCATCCACCTGGGGCTTCAGGTATTGGATCTCTTGATCATCCTTCATGGTTACAACTTGACACTCTAAAGTCAAGTCCACCACAGACAAGCAGAAACTCAGATTCAACCTCCTCTCAGTCACCTTCTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTCAAACTCTTTGGCAAGGATCCAAATGATTTTCCACTTGTCCTTCGATCACAGATTCTCAGCTGGTTATCCCACAGTCCCACAGAGATTGAGAGCTATATAAGGCCAGGCTGCATCATCTTAACAGTATATCTCTGTCTAGAAAAATCTGCATGGGAGGAGCTCAGCGGTAATTTAGGGCTCAGCTTGAAAAAGCTTCTTGCTGCATCAAATGATCCTTTCTGGACAACGGGGTGGGTGTATGCAAGAGTGCAGCATTCTGTAGCCTTTTTGTACAATGGTCAGGTTGTTTTAGACGTTCCCTTGAGCCTTAGAAGCCCACAACACTGTAGGATTTCATTCATTAAACCACTTGCCGTTTCTTCAATGGCAACTACTCAATTTGTTGTCAAAGGTGTCAACCTTTTCCATTCTAGCACAAGGTTACTCTGTGCACTTGAAGGGAAGTATTTGGCACAGCATAGTTGTTGTGACTTGATTGATGGTGTTGATACAGCTATTGAACATGATCAGCATCAGTGCCTTAGCTTCTCTTGTACGATACCAAGTGTTACTGGGAGGGGATTTATTCAGGTGGAAGATCATGGTCTTAGCGGCTGTTCCTTTCCTTTTATTGTTGCGGAGCCAGCAATTTGTGCAGAGATCTGTAATCTGGAGAGTGTGATTGAGGTGGTTGAGATCGGTAAAGATGTAGAGATAAGAAGCAAACAAATGGCAGAAAGGACTCGGGCCTTGGATTTCATACAAGAAATGGGTTGGCTCCTTCATAGAAGTCGTGTGAAAGCTAGGTTGGGTCCCATGGCACCTGTCCAGGATCTGTTCCAATTCAATCGGTTCAAGTGGCTTGTTGACTTCTCCATGGACCATGATTGGTGTGCTGTGATGAAAAAGCTTCTGGACATTGTGTTTGAGGGTACTGTTGACACAGGAGAACATGCCTCTGTCGAGCTTGCATTGTTAGACTTGGGTCTTCTGCATAAAGCTGTGAGGAGAAATTGCAGGTCCATGGTGGAACTACTGTTAAAATTCATACCAGTTCAATCTTCAGATGATGACAGTAAGGAGAAACAAGTTGGCAAGCACTCTGACAGATTCTTATTTAAACCAGATAGTGCTGGCCCTGCTGGTTTGACTCCCCTTCATGTTGCGGCAAGCATGCACGGCTCAGAGAATGTATTGGATGCATTAACTGATGACCCTGGAATGGTGGGAATCAAGGCATGGAAGAGTGCACGGGATAACACGGGTTTGACCCCGGAGGACTACGCATCCATGAGGAGGTACCACTCCTACATTGAACTCGTCCAGACAAAAACAAGCAAGAAAAGTGACGAGACTCATCACCATGTGCTCGACATCCCATCTTCCCTTGTAGATAATAACACAAAGAAGAAGCAAAAGTCGTCATCAAAAGTTTTGAGCTTGCAAACCGAGAAGATTAAAATGGCAGCAGCAGCGACAATCCCACATCAGTGCGGGCTATGCCACCACAAGCTGACTTGTCACAGCACGAGGACAGCACTTGTTTATAGGCCAGCAATGCTCTCAATGGTGGCCATTGCAGCTGTGTGTGTGTGTGTGGCTTTGCTCTTCAAAAGCTCGCCCCAAGTCTCCTATGTCTTCCAGCCCTTCACATGGGAATCATTAGGGTATGGCTCAATGTAG 3111 0.451 MEAKFRGKNQYVYGPVVPEMKAVGKKSLEWNLEDWKWDGDLFTASPLNSVPSDCRNRQSFPVDSEIPAKANTSNILSSNWDDVNPEKGKRELEKRRRAVISEGDELNDEAGCLNLNLGAQIYPIMEGDEKSGKKTKIVGSGTTSNRAVCQVEDCRADLSNAKDYHRRHKVCDVHSKASKALVGNAMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDAVVNGGSLSDERGSSYLLTSLLRILSNMHFAANGSDATKDQDILSHLLRNLASLAGTINGTNIASLLEGSQGLVNAGTSGTSQKVPNLNSNGPEPISSPGSSIRTDNGLSHQNPPKPLGQSETVPAYDMAQKCLPSSDIGVGSLKSPSGLQPSNAVLTRDGLPPQSVAAETTVRRNGLNRIDLNNVYDDIQDDAENLRKSHPPGASGIGSLDHPSWLQLDTLKSSPPQTSRNSDSTSSQSPSSSSGEAQSRTDRIVFKLFGKDPNDFPLVLRSQILSWLSHSPTEIESYIRPGCIILTVYLCLEKSAWEELSGNLGLSLKKLLAASNDPFWTTGWVYARVQHSVAFLYNGQVVLDVPLSLRSPQHCRISFIKPLAVSSMATTQFVVKGVNLFHSSTRLLCALEGKYLAQHSCCDLIDGVDTAIEHDQHQCLSFSCTIPSVTGRGFIQVEDHGLSGCSFPFIVAEPAICAEICNLESVIEVVEIGKDVEIRSKQMAERTRALDFIQEMGWLLHRSRVKARLGPMAPVQDLFQFNRFKWLVDFSMDHDWCAVMKKLLDIVFEGTVDTGEHASVELALLDLGLLHKAVRRNCRSMVELLLKFIPVQSSDDDSKEKQVGKHSDRFLFKPDSAGPAGLTPLHVAASMHGSENVLDALTDDPGMVGIKAWKSARDNTGLTPEDYASMRRYHSYIELVQTKTSKKSDETHHHVLDIPSSLVDNNTKKKQKSSSKVLSLQTEKIKMAAAATIPHQCGLCHHKLTCHSTRTALVYRPAMLSMVAIAAVCVCVALLFKSSPQVSYVFQPFTWESLGYGSM 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01818 1036 Coils Coil 89 109 - -
Accr8g01818 1036 MobiDBLite consensus disorder prediction 367 386 - -
Accr8g01818 1036 ProSiteProfiles Zinc finger SBP-type profile. 146 223 IPR004333 GO:0003677
Accr8g01818 1036 Pfam SBP domain 149 222 IPR004333 GO:0003677
Accr8g01818 1036 Gene3D - 139 210 IPR036893 GO:0003677|GO:0005634
Accr8g01818 1036 Coils Coil 406 426 - -
Accr8g01818 1036 MobiDBLite consensus disorder prediction 303 348 - -
Accr8g01818 1036 FunFam Squamosa promoter-binding-like protein 14 140 210 - -
Accr8g01818 1036 SUPERFAMILY Ankyrin repeat 803 916 IPR036770 -
Accr8g01818 1036 SUPERFAMILY SBT domain 147 228 IPR036893 GO:0003677|GO:0005634
Accr8g01818 1036 MobiDBLite consensus disorder prediction 303 345 - -
Accr8g01818 1036 MobiDBLite consensus disorder prediction 364 389 - -
Accr8g01818 1036 MobiDBLite consensus disorder prediction 444 476 - -
Accr8g01818 1036 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 99 907 IPR044817 GO:0003677
Accr8g01818 1036 Gene3D - 788 934 IPR036770 -
Accr8g01818 1036 MobiDBLite consensus disorder prediction 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01818 Accr-Chr8 40606648 40612809 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01818 1 1035 SBP-box Gene Family AT3G60030 47.464 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Accr8g01818 SBP 1.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01818 - - gmx:100776125 1435.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g01818 8 40606648 40612809 Accr8g01818 8 40606648 40612809 ECH